Variant report

Variant	rs551555323
Chromosome Location	chr10:118011758-118011759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1043339	chr10:118010822-118025492	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118007800-118013200	Weak transcription	HSMMtube	muscle
2	chr10:118008000-118014000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr10:118008600-118012600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:118008600-118013400	Weak transcription	HSMM	muscle
5	chr10:118008600-118014000	Weak transcription	Fetal Stomach	stomach
6	chr10:118009000-118013200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:118011000-118014000	Weak transcription	Fetal Lung	lung
8	chr10:118011200-118012000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:118011200-118012200	Enhancers	Liver	Liver
10	chr10:118011200-118012200	Enhancers	Gastric	stomach
11	chr10:118011200-118012200	Enhancers	Pancreas	Pancrea
12	chr10:118011200-118015200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:118011400-118013000	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:118011400-118014400	Weak transcription	Brain Anterior Caudate	brain
15	chr10:118011600-118012200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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