The 2.0 version of rSNPBase

Variant report

Variant rs551586120
Chromosome Location chr5:115866122-115866123
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115845800-115867200 Weak transcription Right Ventricle heart
2 chr5:115858200-115867000 Enhancers HUES64 Cell Line embryonic stem cell
3 chr5:115858400-115873600 Enhancers iPS-15b Cell Line embryonic stem cell
4 chr5:115859400-115870000 Weak transcription Fetal Muscle Trunk muscle
5 chr5:115860000-115869600 Enhancers iPS-20b Cell Line embryonic stem cell
6 chr5:115860000-115872000 Enhancers HUES48 Cell Line embryonic stem cell
7 chr5:115860000-115872200 Enhancers HepG2 liver
8 chr5:115860200-115867000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
9 chr5:115861000-115870400 Enhancers iPS-18 Cell Line embryonic stem cell
10 chr5:115861600-115867000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr5:115863600-115867000 Enhancers Cortex derived primary cultured neurospheres brain
12 chr5:115864000-115866200 Enhancers Fetal Kidney kidney
13 chr5:115864000-115867200 Enhancers Fetal Adrenal Gland Adrenal Gland
14 chr5:115864400-115867000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr5:115864400-115867000 Weak transcription Lung lung
16 chr5:115864400-115870200 Weak transcription Left Ventricle heart
17 chr5:115864600-115866400 Enhancers Duodenum Smooth Muscle Duodenum
18 chr5:115864600-115867000 Weak transcription Psoas Muscle Psoas
19 chr5:115864600-115867000 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr5:115864600-115867400 Weak transcription Pancreas Pancrea
21 chr5:115864600-115867600 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr5:115864600-115869400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
23 chr5:115864600-115869400 Weak transcription Colonic Mucosa Colon
24 chr5:115864600-115869600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr5:115864600-115870000 Weak transcription Adipose Nuclei Adipose
26 chr5:115864600-115870800 Enhancers Fetal Intestine Large intestine
27 chr5:115864600-115871600 Enhancers Fetal Intestine Small intestine
28 chr5:115864600-115872200 Weak transcription Fetal Brain Male brain
29 chr5:115864800-115866200 Enhancers Brain Angular Gyrus brain
30 chr5:115864800-115866600 Weak transcription Placenta Placenta
31 chr5:115864800-115866800 Enhancers Rectal Mucosa Donor 29 rectum
32 chr5:115864800-115868200 Weak transcription Liver Liver
33 chr5:115864800-115868400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr5:115864800-115868400 Weak transcription Brain Inferior Temporal Lobe brain
35 chr5:115864800-115868400 Weak transcription Fetal Brain Female brain
36 chr5:115864800-115868600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr5:115864800-115870000 Weak transcription Right Atrium heart
38 chr5:115864800-115872000 Enhancers Brain Substantia Nigra brain
39 chr5:115865000-115866200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr5:115865000-115866200 Enhancers Brain Hippocampus Middle brain
41 chr5:115865200-115866200 Enhancers Stomach Smooth Muscle stomach
42 chr5:115865200-115866600 Enhancers Colon Smooth Muscle Colon
43 chr5:115865200-115867600 Weak transcription ES-WA7 Cell Line embryonic stem cell
44 chr5:115865200-115867800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr5:115865200-115868000 Weak transcription Fetal Heart heart
46 chr5:115865400-115866600 Enhancers Rectal Smooth Muscle rectum
47 chr5:115865600-115866800 Enhancers Duodenum Mucosa Duodenum
48 chr5:115865600-115867000 Weak transcription ES-I3 Cell Line embryonic stem cell
49 chr5:115865600-115867000 Weak transcription H9 Cell Line embryonic stem cell
50 chr5:115865600-115867200 Weak transcription Ovary ovary

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Last update: Aug 31, 2015