Variant report

Variant	rs551600782
Chromosome Location	chr4:143166926-143166927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1027781	chr4:142943485-143306567	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830098	chr4:143050143-143234384	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv595604	chr4:143077401-143228914	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830099	chr4:143138257-143285055	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3513602	chr4:143166829-143167259	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	esv2256713	chr4:143166878-143167216	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143058000-143181000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:143129200-143169600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr4:143135400-143184200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:143151000-143185000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr4:143151200-143174000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:143153800-143181000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:143157600-143173800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr4:143158200-143173600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr4:143158400-143174000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:143158600-143173800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:143159200-143181000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr4:143159200-143181000	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:143160200-143171000	Weak transcription	NHEK	skin
14	chr4:143160400-143167200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:143160400-143180000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr4:143160600-143185000	Weak transcription	HMEC	breast
17	chr4:143160600-143186400	Weak transcription	HSMM	muscle
18	chr4:143164000-143172800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:143164400-143168000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:143164400-143169000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr4:143164400-143169000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:143164400-143181000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr4:143164600-143176200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:143164600-143186000	Weak transcription	HSMMtube	muscle
25	chr4:143164800-143170000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:143164800-143170000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr4:143164800-143170000	Weak transcription	NHDF-Ad	bronchial
28	chr4:143164800-143170200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:143164800-143170800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:143164800-143172800	Weak transcription	Primary T cells from cord blood	blood
31	chr4:143166600-143173000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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