Variant report

Variant	rs551638136
Chromosome Location	chr10:38667066-38667067
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv33710	chr10:38545898-38671289	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv427860	chr10:38588021-38818835	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv895034	chr10:38632352-38743545	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv947859	chr10:38633447-38674546	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2764202	chr10:38641508-39076221	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1048953	chr10:38645824-39074038	Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv428230	chr10:38652001-38818835	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv540567	chr10:38666856-38676001	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv540568	chr10:38666856-38684802	Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38645800-38669000	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:38646000-38670600	Weak transcription	Fetal Stomach	stomach
3	chr10:38646200-38669200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:38646200-38669200	Weak transcription	Right Ventricle	heart
5	chr10:38648200-38668600	Weak transcription	HUVEC	blood vessel
6	chr10:38655400-38669000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr10:38656000-38668600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:38656200-38669200	Weak transcription	Primary B cells from cord blood	blood
9	chr10:38656400-38668800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:38656400-38670000	Weak transcription	Fetal Lung	lung
11	chr10:38656600-38670600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:38657600-38668600	Weak transcription	Fetal Thymus	thymus
13	chr10:38658200-38668400	Weak transcription	Placenta	Placenta
14	chr10:38660600-38667800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr10:38660600-38668600	Weak transcription	Brain Anterior Caudate	brain
16	chr10:38660600-38669000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:38660600-38669000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:38660600-38669000	Weak transcription	Spleen	Spleen
19	chr10:38660600-38670400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:38660600-38670600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:38660600-38671600	Weak transcription	HepG2	liver
22	chr10:38660800-38667200	Weak transcription	Primary T cells from cord blood	blood
23	chr10:38661000-38667800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:38661000-38668000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:38661000-38668000	Weak transcription	HSMMtube	muscle
26	chr10:38661000-38668200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:38661000-38668200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr10:38661000-38668600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr10:38661000-38668800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr10:38661000-38668800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:38661000-38668800	Weak transcription	Fetal Brain Female	brain
32	chr10:38661000-38669000	Weak transcription	Fetal Intestine Large	intestine
33	chr10:38661000-38669400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr10:38661000-38669400	Weak transcription	Fetal Muscle Leg	muscle
35	chr10:38661000-38669800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr10:38661000-38670200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:38661000-38670200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr10:38661000-38670200	Weak transcription	Pancreas	Pancrea
39	chr10:38661000-38670600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr10:38661000-38670600	Weak transcription	Esophagus	oesophagus
41	chr10:38661000-38670800	Weak transcription	Left Ventricle	heart
42	chr10:38661000-38683400	Weak transcription	Brain Substantia Nigra	brain
43	chr10:38661200-38667800	Weak transcription	Adipose Nuclei	Adipose
44	chr10:38661200-38669000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr10:38661200-38670400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr10:38661200-38670800	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr10:38661200-38680400	Weak transcription	GM12878-XiMat	blood
48	chr10:38661800-38669400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr10:38665200-38668000	Strong transcription	Liver	Liver
50	chr10:38666200-38667400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links