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Variant report
Variant
rs551642048
Chromosome Location
chr6:12514244-12514245
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:13)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:13 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
POLR2A
chr6:12514240-12514540
A549
lung:
n/a
n/a
2
POLR2A
chr6:12514233-12514651
GM12878
blood:
n/a
n/a
3
POLR2A
chr6:12514097-12514963
GM12892
blood:
n/a
n/a
4
ZBTB33
chr6:12514239-12515008
K562
blood:
n/a
n/a
5
POU2F2
chr6:12514238-12515027
GM12878
blood:
n/a
n/a
6
GATA2
chr6:12514230-12514553
K562
blood:
n/a
n/a
7
POLR2A
chr6:12514241-12514998
GM12891
blood:
n/a
n/a
8
POLR2A
chr6:12514229-12514958
GM12891
blood:
n/a
n/a
9
HEY1
chr6:12514212-12514586
K562
blood:
n/a
n/a
10
POLR2A
chr6:12514189-12515116
H1-hESC
embryonic stem cell:
n/a
n/a
11
POLR2A
chr6:12514228-12515071
GM12878
blood:
n/a
n/a
12
POLR2A
chr6:12514164-12515010
GM12892
blood:
n/a
n/a
13
POLR2A
chr6:12514233-12515027
GM12891
blood:
n/a
n/a
No data
No data
No data
No data
No data
Variant related genes
Relation type
RPL15P3
TF binding region
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv970077
chr6:12514065-12515389
Inactive region
TF binding regionCpG island
1 gene(s)
inside rSNPs
diseases
2
esv1139827
chr6:12514233-12514257
Inactive region
TF binding region
1 gene(s)
inside rSNPs
n/a
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links