Variant report

Variant	rs551663710
Chromosome Location	chr3:55861020-55861021
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590361	chr3:55834871-55876104	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv3440427	chr3:55860016-55865704	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55860000-55861800	Enhancers	Fetal Heart	heart
2	chr3:55860200-55862200	Enhancers	Fetal Lung	lung
3	chr3:55860400-55861200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:55860600-55861200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:55860600-55861600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:55860800-55861200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:55860800-55861200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:55860800-55861200	Enhancers	Brain Germinal Matrix	brain
9	chr3:55860800-55861200	Enhancers	NH-A	brain
10	chr3:55861000-55861200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:55861000-55861200	Enhancers	Brain Hippocampus Middle	brain
12	chr3:55861000-55861200	Active TSS	Right Atrium	heart
13	chr3:55861000-55862200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:55861000-55862200	Active TSS	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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