Variant report

Variant	rs551693560
Chromosome Location	chr9:96339824-96339825
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:101964530..101966057-chr9:96338377..96341052,2	MCF-7	breast:
2	chr9:96207292..96208805-chr9:96339241..96341688,2	MCF-7	breast:
3	chr9:95818234..95820974-chr9:96339140..96341685,2	MCF-7	breast:
4	chr15:64672393..64674955-chr9:96338463..96341441,2	MCF-7	breast:
5	chr9:96213158..96214882-chr9:96338001..96341678,3	K562	blood:
6	chr9:96211528..96214948-chr9:96337573..96343441,10	MCF-7	breast:
7	chr9:96211672..96218862-chr9:96335264..96341672,16	MCF-7	breast:
8	chr9:96337024..96339848-chr9:96617971..96619932,2	MCF-7	breast:
9	chr9:96298295..96300963-chr9:96339660..96341258,2	MCF-7	breast:
10	chr9:95895154..95898000-chr9:96338001..96340609,3	MCF-7	breast:
11	chr9:95856094..95858375-chr9:96337008..96340445,3	MCF-7	breast:
12	chr8:144819610..144821971-chr9:96337841..96340310,2	MCF-7	breast:
13	chr14:52455551..52457081-chr9:96338294..96340039,2	MCF-7	breast:
14	chr9:96289339..96291734-chr9:96339194..96341014,2	MCF-7	breast:
15	chr9:95894803..95898160-chr9:96337820..96340366,3	MCF-7	breast:
16	chr9:96323290..96325963-chr9:96339113..96341830,2	MCF-7	breast:
17	chr9:96214499..96217099-chr9:96338317..96340265,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000203499	Chromatin interaction
ENSG00000048828	Chromatin interaction
ENSG00000087302	Chromatin interaction
ENSG00000164924	Chromatin interaction
ENSG00000223446	Chromatin interaction
ENSG00000231990	Chromatin interaction
ENSG00000131669	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000166803	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041803	chr9:96299639-96342013	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv824985	chr9:96337735-96340349	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	esv3359621	chr9:96337881-96340629	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	esv3422729	chr9:96337956-96340504	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96337600-96340000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:96337600-96340000	Active TSS	Ovary	ovary
3	chr9:96337600-96340000	Active TSS	A549	lung
4	chr9:96337600-96340200	Active TSS	Aorta	Aorta
5	chr9:96337600-96340400	Active TSS	H9 Cell Line	embryonic stem cell
6	chr9:96337600-96340400	Active TSS	Fetal Kidney	kidney
7	chr9:96337600-96340600	Active TSS	HSMMtube	muscle
8	chr9:96337600-96341000	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr9:96337800-96340000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:96337800-96340000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:96337800-96340000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:96337800-96340000	Active TSS	Colon Smooth Muscle	Colon
13	chr9:96337800-96340000	Active TSS	Fetal Lung	lung
14	chr9:96337800-96340000	Active TSS	HSMM	muscle
15	chr9:96337800-96340000	Active TSS	NHDF-Ad	bronchial
16	chr9:96337800-96340200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:96337800-96340200	Active TSS	Small Intestine	intestine
18	chr9:96337800-96340400	Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr9:96338000-96340000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:96338000-96340000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:96338000-96340000	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr9:96338000-96340000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:96338000-96340000	Active TSS	Muscle Satellite Cultured Cells	--
24	chr9:96338000-96340000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:96338000-96340000	Active TSS	Brain Angular Gyrus	brain
26	chr9:96338000-96340000	Active TSS	Brain Anterior Caudate	brain
27	chr9:96338000-96340000	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr9:96338000-96340000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr9:96338000-96340000	Active TSS	Brain Substantia Nigra	brain
30	chr9:96338000-96340000	Active TSS	Duodenum Mucosa	Duodenum
31	chr9:96338000-96340000	Active TSS	Esophagus	oesophagus
32	chr9:96338000-96340000	Active TSS	Fetal Intestine Large	intestine
33	chr9:96338000-96340000	Active TSS	Fetal Intestine Small	intestine
34	chr9:96338000-96340000	Active TSS	Gastric	stomach
35	chr9:96338000-96340000	Active TSS	Left Ventricle	heart
36	chr9:96338000-96340000	Active TSS	Psoas Muscle	Psoas
37	chr9:96338000-96340000	Active TSS	Rectal Smooth Muscle	rectum
38	chr9:96338000-96340000	Active TSS	Right Ventricle	heart
39	chr9:96338000-96340000	Active TSS	Thymus	Thymus
40	chr9:96338000-96340000	Active TSS	HUVEC	blood vessel
41	chr9:96338000-96340200	Active TSS	Lung	lung
42	chr9:96338000-96340200	Active TSS	NHLF	lung
43	chr9:96338000-96341000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:96338200-96340000	Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr9:96338200-96340000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr9:96338200-96340000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
47	chr9:96338200-96340000	Active TSS	Brain Cingulate Gyrus	brain
48	chr9:96338200-96340000	Active TSS	Placenta	Placenta
49	chr9:96338200-96340000	Active TSS	Pancreas	Pancrea
50	chr9:96338400-96340000	Active TSS	HepG2	liver

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