Variant report

Variant	rs551727671
Chromosome Location	chr13:40226081-40226082
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:40226031-40226081	A549	lung:	n/a
2	chr13:40226031-40226081	GM12891	blood:	n/a
3	chr13:40226031-40226081	MCF10A-Er-Src	breast:	n/a
4	chr13:40226031-40226081	BE2_C	brain:	n/a
5	chr13:40226031-40226081	MCF-7	breast:	n/a
6	chr13:40226031-40226081	PFSK-1	brain:	n/a
7	chr13:40226031-40226081	AoSMC	blood vessel:	n/a
8	chr13:40226031-40226081	HL-60	blood:	n/a
9	chr13:40226031-40226081	ProgFib	skin:	n/a
10	chr13:40226031-40226081	SK-N-MC	brain:	n/a
11	chr13:40226031-40226081	CMK	blood:	n/a
12	chr13:40226031-40226081	HUVEC	blood vessel:	n/a
13	chr13:40226031-40226081	HEEpiC	esophagus:	n/a
14	chr13:40226031-40226081	AG09319	gingival:	n/a
15	chr13:40226031-40226081	GM06990	blood:	n/a
16	chr13:40226031-40226081	U87	brain:	n/a
17	chr13:40226031-40226081	SK-N-SH_RA	brain:	n/a
18	chr13:40226031-40226081	H1-hESC	embryonic stem cell:	embryo
19	chr13:40226031-40226081	PrEC	prostate:	n/a
20	chr13:40226031-40226081	NH-A	brain:	n/a
21	chr13:40226031-40226081	Jurkat	blood:	n/a
22	chr13:40226031-40226081	HCPEpiC	choroid plexus:	n/a
23	chr13:40226031-40226081	K562	blood:	n/a
24	chr13:40226031-40226081	HAEpiC	amniotic membrane:	n/a
25	chr13:40226031-40226081	AG04449	skin:	fetal
26	chr13:40226031-40226081	SKMC	muscle:	n/a
27	chr13:40226031-40226081	HCT-116	colon:	n/a
28	chr13:40226031-40226081	GM19239	blood:	n/a
29	chr13:40226031-40226081	HNPCEpiC	eye:	n/a
30	chr13:40226031-40226081	HEK293	kidney:	embryo
31	chr13:40226031-40226081	NHBE	bronchial:	n/a
32	chr13:40226031-40226081	HRCEpiC	kidney:	n/a
33	chr13:40226031-40226081	HIPEpiC	eye:	n/a
34	chr13:40226031-40226081	BJ	skin:	n/a
35	chr13:40226031-40226081	PANC-1	pancreas:	n/a
36	chr13:40226031-40226081	IMR90	lung:	fetal
37	chr13:40226031-40226081	AG10803	skin:	n/a
38	chr13:40226031-40226081	HCM	heart:	n/a
39	chr13:40226031-40226081	ECC-1	luminal epithelium:	n/a
40	chr13:40226031-40226081	HCF	heart:	n/a
41	chr13:40226031-40226081	HPAEpiC	pulmonary alveolar:	n/a
42	chr13:40226031-40226081	NT2-D1	testis:	n/a
43	chr13:40226031-40226081	HepG2	liver:	n/a
44	chr13:40226031-40226081	NB4	blood:	n/a
45	chr13:40226031-40226081	GM12878	blood:	n/a
46	chr13:40226031-40226081	ovcar-3	ovarian:	n/a
47	chr13:40226031-40226081	SK-N-SH	brain:	n/a
48	chr13:40226031-40226081	LNCaP	prostate:	n/a
49	chr13:40226031-40226081	HRPEpiC	eye:	n/a
50	chr13:40226031-40226081	SAEC	small airway:	n/a

No data

Variant related genes	Relation type
ENSG00000216014	CpG island
COG6	CpG island

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1054797	chr13:40198744-40618428	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541755	chr13:40198744-40618428	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
4	nsv832586	chr13:40222880-40379063	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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