Variant report

Variant	rs551737819
Chromosome Location	chr15:41233724-41233725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41231280..41234394-chr15:41292861..41295820,3	K562	blood:
2	chr15:41233583..41234336-chr5:43483972..43484531,2	Hela-S3	cervix:
3	chr15:41233308..41234007-chrX:48958051..48958896,2	Hela-S3	cervix:
4	chr15:41233383..41235115-chr15:41239344..41241397,2	MCF-7	breast:
5	chr15:41232489..41235569-chr15:41253295..41255593,3	MCF-7	breast:
6	chr15:41233447..41234350-chr15:63892233..63892913,2	Hela-S3	cervix:
7	chr15:40886274..40887836-chr15:41232537..41234993,2	K562	blood:
8	chr15:41232946..41236246-chr15:41262141..41265286,3	MCF-7	breast:
9	chr15:40978878..40981252-chr15:41232643..41234691,2	MCF-7	breast:
10	chr15:41206994..41209856-chr15:41231483..41234125,2	MCF-7	breast:
11	chr15:41233298..41234275-chr15:72978457..72979157,2	Hela-S3	cervix:
12	chr11:62609122..62610004-chr15:41233254..41234137,2	Hela-S3	cervix:
13	chr15:41193554..41195434-chr15:41232672..41235208,2	K562	blood:
14	chr11:62608653..62609556-chr15:41233703..41234613,3	HCT-116	colon:
15	chr12:110485906..110486440-chr15:41233524..41234079,2	Hela-S3	cervix:
16	chr15:41201322..41202834-chr15:41232432..41234012,2	MCF-7	breast:
17	chr15:41233547..41234323-chr2:32390434..32390966,2	HCT-116	colon:
18	chr1:155947571..155948169-chr15:41233547..41234127,2	Hela-S3	cervix:
19	chr15:41196058..41200363-chr15:41232746..41236796,6	MCF-7	breast:
20	chr15:41195653..41200412-chr15:41230792..41235632,4	MCF-7	breast:
21	chr15:41232897..41235509-chr15:41313138..41315009,3	MCF-7	breast:
22	chr15:41216351..41218911-chr15:41231824..41234826,3	MCF-7	breast:
23	chr15:41231034..41235223-chr15:41248876..41252149,4	MCF-7	breast:
24	chr15:41233061..41238851-chr15:41242514..41246532,9	MCF-7	breast:
25	chr15:41232446..41235218-chr15:41255104..41257063,2	K562	blood:
26	chr15:41233616..41234427-chr19:3534815..3535324,2	Hela-S3	cervix:
27	chr15:41231932..41234904-chr15:41266157..41268211,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272716	Chromatin interaction
ENSG00000116584	Chromatin interaction
ENSG00000152683	Chromatin interaction
ENSG00000251161	Chromatin interaction
ENSG00000151881	Chromatin interaction
ENSG00000249492	Chromatin interaction
ENSG00000196998	Chromatin interaction
ENSG00000140463	Chromatin interaction
ENSG00000259405	Chromatin interaction
ENSG00000174456	Chromatin interaction
ENSG00000175202	Chromatin interaction
ENSG00000137812	Chromatin interaction
ENSG00000128965	Chromatin interaction
ENSG00000133316	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv904104	chr15:41149824-41234932	Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	esv1819792	chr15:41184722-41234825	Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv904106	chr15:41221067-41259523	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
8	esv3327396	chr15:41232885-41235433	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41230600-41233800	Enhancers	Spleen	Spleen
2	chr15:41230800-41233800	Weak transcription	Gastric	stomach
3	chr15:41232000-41233800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr15:41232000-41234000	Enhancers	Primary B cells from peripheral blood	blood
5	chr15:41232000-41234000	Enhancers	Fetal Kidney	kidney
6	chr15:41232000-41234000	Flanking Active TSS	GM12878-XiMat	blood
7	chr15:41232400-41233800	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr15:41232400-41233800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr15:41232400-41234000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr15:41232400-41234000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:41232400-41234000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:41232400-41234000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr15:41232400-41234200	Enhancers	Placenta	Placenta
14	chr15:41232400-41234400	Enhancers	Fetal Lung	lung
15	chr15:41232400-41235000	Enhancers	Fetal Brain Male	brain
16	chr15:41232400-41235400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:41232600-41233800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:41232600-41234000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:41232600-41234000	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr15:41232800-41233800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
21	chr15:41232800-41234000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr15:41233000-41233800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:41233000-41233800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
24	chr15:41233000-41233800	Flanking Active TSS	Hela-S3	cervix
25	chr15:41233000-41233800	Flanking Bivalent TSS/Enh	HepG2	liver
26	chr15:41233000-41234000	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr15:41233000-41234200	Enhancers	Primary T cells from cord blood	blood
28	chr15:41233000-41234400	Enhancers	Liver	Liver
29	chr15:41233000-41234600	Active TSS	Rectal Smooth Muscle	rectum
30	chr15:41233200-41233800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr15:41233200-41233800	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr15:41233200-41233800	Flanking Active TSS	Duodenum Mucosa	Duodenum
33	chr15:41233200-41233800	Enhancers	Fetal Heart	heart
34	chr15:41233200-41233800	Flanking Active TSS	Fetal Intestine Large	intestine
35	chr15:41233200-41233800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
36	chr15:41233200-41233800	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr15:41233200-41234000	Flanking Active TSS	NHLF	lung
38	chr15:41233200-41234200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:41233200-41234400	Enhancers	Stomach Mucosa	stomach
40	chr15:41233200-41234600	Active TSS	H9 Cell Line	embryonic stem cell
41	chr15:41233200-41234600	Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr15:41233200-41235000	Flanking Active TSS	Colonic Mucosa	Colon
43	chr15:41233400-41233800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
44	chr15:41233400-41233800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
45	chr15:41233400-41233800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
46	chr15:41233400-41233800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr15:41233400-41233800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr15:41233400-41233800	Flanking Active TSS	Brain Anterior Caudate	brain
49	chr15:41233400-41233800	Flanking Active TSS	Brain Germinal Matrix	brain
50	chr15:41233400-41233800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain

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