Variant report

Variant	rs551739086
Chromosome Location	chr9:84527594-84527595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:84527546-84527596	HCF	heart:	n/a
2	chr9:84527546-84527596	U87	brain:	n/a
3	chr9:84527546-84527596	MCF-7	breast:	n/a
4	chr9:84527546-84527596	AG04449	skin:	fetal
5	chr9:84527546-84527596	Hepatocyte	liver:	n/a
6	chr9:84527546-84527596	PrEC	prostate:	n/a
7	chr9:84527546-84527596	NHDF-neo	bronchial:	n/a
8	chr9:84527546-84527596	Hela-S3	cervix:	n/a
9	chr9:84527546-84527596	BE2_C	brain:	n/a
10	chr9:84527546-84527596	HNPCEpiC	eye:	n/a
11	chr9:84527546-84527596	GM12878	blood:	n/a
12	chr9:84527546-84527596	ProgFib	skin:	n/a
13	chr9:84527546-84527596	HPAEpiC	pulmonary alveolar:	n/a
14	chr9:84527546-84527596	GM12891	blood:	n/a
15	chr9:84527546-84527596	SK-N-MC	brain:	n/a
16	chr9:84527546-84527596	NH-A	brain:	n/a
17	chr9:84527546-84527596	HEK293	kidney:	embryo
18	chr9:84527546-84527596	MCF10A-Er-Src	breast:	n/a
19	chr9:84527546-84527596	AG10803	skin:	n/a
20	chr9:84527546-84527596	GM12892	blood:	n/a
21	chr9:84527546-84527596	NHBE	bronchial:	n/a
22	chr9:84527546-84527596	GM06990	blood:	n/a
23	chr9:84527546-84527596	AG04450	lung:	fetal
24	chr9:84527546-84527596	PFSK-1	brain:	n/a
25	chr9:84527546-84527596	HL-60	blood:	n/a
26	chr9:84527546-84527596	ovcar-3	ovarian:	n/a
27	chr9:84527546-84527596	A549	lung:	n/a
28	chr9:84527546-84527596	HCPEpiC	choroid plexus:	n/a
29	chr9:84527546-84527596	PANC-1	pancreas:	n/a
30	chr9:84527546-84527596	NB4	blood:	n/a
31	chr9:84527546-84527596	SAEC	small airway:	n/a
32	chr9:84527546-84527596	HRE	kidney:	n/a
33	chr9:84527546-84527596	Caco-2	colon:	n/a
34	chr9:84527546-84527596	HCT-116	colon:	n/a
35	chr9:84527546-84527596	SKMC	muscle:	n/a
36	chr9:84527546-84527596	AG09319	gingival:	n/a
37	chr9:84527546-84527596	H1-hESC	embryonic stem cell:	embryo
38	chr9:84527546-84527596	HMEC	breast:	n/a
39	chr9:84527546-84527596	ECC-1	luminal epithelium:	n/a
40	chr9:84527546-84527596	BJ	skin:	n/a
41	chr9:84527546-84527596	HUVEC	blood vessel:	n/a
42	chr9:84527546-84527596	HCM	heart:	n/a
43	chr9:84527546-84527596	SK-N-SH	brain:	n/a
44	chr9:84527546-84527596	K562	blood:	n/a
45	chr9:84527546-84527596	AoSMC	blood vessel:	n/a
46	chr9:84527546-84527596	SK-N-SH_RA	brain:	n/a
47	chr9:84527546-84527596	AG09309	skin:	n/a
48	chr9:84527546-84527596	HepG2	liver:	n/a
49	chr9:84527546-84527596	RPTEC	kidney:	n/a
50	chr9:84527546-84527596	HIPEpiC	eye:	n/a

No data

Variant related genes	Relation type
SPATA31D5P	CpG island

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831639	chr9:84501548-84651151	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv508555	chr9:84507699-84580028	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1820579	chr9:84518394-84556369	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1849322	chr9:84518394-84564267	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv1800180	chr9:84519751-84557638	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv17765	chr9:84527569-84566607	Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84526600-84527800	Enhancers	Liver	Liver

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