Variant report

Variant	rs551758674
Chromosome Location	chr9:117690424-117690425
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117685063..117687885-chr9:117689510..117691619,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TNFSF8-2	chr9:117690365-117690580	l_3840_NR_024032

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv6680	chr9:117690388-117699304	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117673200-117692400	Weak transcription	Spleen	Spleen
2	chr9:117687800-117693400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:117688400-117693000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr9:117688600-117692800	Weak transcription	Fetal Lung	lung
5	chr9:117688800-117691000	Weak transcription	Placenta	Placenta
6	chr9:117689000-117693400	Active TSS	Thymus	Thymus
7	chr9:117689400-117690600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
8	chr9:117689400-117691200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr9:117689400-117691400	Flanking Active TSS	Primary T cells from cord blood	blood
10	chr9:117689400-117692000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
11	chr9:117689400-117693600	Flanking Active TSS	Dnd41	blood
12	chr9:117689600-117690600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr9:117689600-117690600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
14	chr9:117689600-117690600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:117689600-117690800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
16	chr9:117689600-117690800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
17	chr9:117689600-117691400	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr9:117689600-117692400	Active TSS	Primary T cells fromperipheralblood	blood
19	chr9:117689600-117692800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
20	chr9:117689600-117693000	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr9:117689600-117693600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:117689800-117690600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr9:117689800-117692800	Active TSS	Duodenum Mucosa	Duodenum
24	chr9:117689800-117693200	Active TSS	Adipose Nuclei	Adipose
25	chr9:117690000-117692000	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr9:117690200-117690600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr9:117690200-117692400	Active TSS	Primary monocytes fromperipheralblood	blood
28	chr9:117690200-117692800	Active TSS	Liver	Liver
29	chr9:117690200-117692800	Active TSS	Rectal Mucosa Donor 31	rectum
30	chr9:117690200-117693000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr9:117690400-117690600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
32	chr9:117690400-117690600	Flanking Active TSS	Sigmoid Colon	Sigmoid Colon
33	chr9:117690400-117690800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr9:117690400-117690800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
35	chr9:117690400-117690800	Active TSS	Brain Hippocampus Middle	brain
36	chr9:117690400-117691000	Enhancers	Primary B cells from peripheral blood	blood
37	chr9:117690400-117691000	Flanking Active TSS	Primary hematopoietic stem cells	blood
38	chr9:117690400-117691000	Enhancers	Fetal Thymus	thymus
39	chr9:117690400-117691600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

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