Variant report

Variant	rs551796881
Chromosome Location	chr5:41336476-41336477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1851387	chr5:41336050-41423631	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41333400-41337200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:41333800-41345800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr5:41334000-41336600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:41334000-41337600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:41335000-41336800	Enhancers	Brain Substantia Nigra	brain
6	chr5:41335000-41336800	Weak transcription	Right Atrium	heart
7	chr5:41335200-41336800	Enhancers	Brain Anterior Caudate	brain
8	chr5:41335200-41337400	Enhancers	Colon Smooth Muscle	Colon
9	chr5:41335400-41336600	Weak transcription	Left Ventricle	heart
10	chr5:41335400-41336800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:41335400-41336800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:41335400-41337400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:41335400-41338200	Weak transcription	Fetal Lung	lung
14	chr5:41335600-41336600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:41335800-41336800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:41335800-41337400	Enhancers	Right Ventricle	heart
17	chr5:41336000-41337000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:41336000-41338200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr5:41336200-41336600	Weak transcription	Ovary	ovary
20	chr5:41336200-41337400	Enhancers	Adipose Nuclei	Adipose
21	chr5:41336400-41337000	Genic enhancers	Fetal Heart	heart

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