Variant report

Variant	rs551858534
Chromosome Location	chr10:112836700-112836701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr10:112835739-112837184	H1-neurons	neurons:	n/a	chr10:112836820-112836830 chr10:112837090-112837103 chr10:112836237-112836246
2	MAX	chr10:112835887-112836957	H1-hESC	embryonic stem cell:	n/a	chr10:112836707-112836716
3	POLR2A	chr10:112836595-112836936	Gliobla	brain:	n/a	n/a
4	TAF1	chr10:112836580-112837024	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr10:112836423-112837125	H1-hESC	embryonic stem cell:	n/a	n/a
6	USF1	chr10:112836523-112836943	H1-hESC	embryonic stem cell:	n/a	chr10:112836916-112836932
7	POLR2A	chr10:112836456-112837058	H1-neurons	neurons:	n/a	n/a
8	E2F6	chr10:112835913-112837335	H1-hESC	embryonic stem cell:	n/a	chr10:112836146-112836153 chr10:112836146-112836153 chr10:112837296-112837305 chr10:112837053-112837063 chr10:112837056-112837066 chr10:112837052-112837061 chr10:112836116-112836125 chr10:112836146-112836153
9	RAD21	chr10:112835596-112837208	H1-hESC	embryonic stem cell:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
10	SIN3A	chr10:112835862-112837044	H1-hESC	embryonic stem cell:	n/a	chr10:112836164-112836175 chr10:112836796-112836805
11	RAD21	chr10:112835799-112837044	H1-hESC	embryonic stem cell:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
12	USF1	chr10:112836460-112836884	H1-hESC	embryonic stem cell:	n/a	chr10:112836493-112836509
13	POLR2A	chr10:112836573-112836954	MCF-7	breast:	n/a	n/a
14	MAX	chr10:112836543-112837018	MCF-7	breast:	n/a	chr10:112836707-112836716
15	USF1	chr10:112836451-112836954	ECC-1	luminal epithelium:	n/a	chr10:112836916-112836932 chr10:112836493-112836509
16	TAF1	chr10:112836495-112837011	H1-hESC	embryonic stem cell:	n/a	n/a
17	MAX	chr10:112835920-112837039	ECC-1	luminal epithelium:	n/a	chr10:112837013-112837023 chr10:112836707-112836716
18	CTCF	chr10:112836580-112836730	SAEC	small airway:	n/a	chr10:112836706-112836719
19	POLR2A	chr10:112836644-112836943	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr10:112836455-112837014	H1-neurons	neurons:	n/a	n/a
21	CTCF	chr10:112835561-112837016	SK-N-SH	brain:	n/a	chr10:112836519-112836537 chr10:112836045-112836053 chr10:112836706-112836719 chr10:112836035-112836048 chr10:112836522-112836531 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112836932-112836941 chr10:112835841-112835850 chr10:112836522-112836535
22	CTCF	chr10:112836600-112836750	HCM	heart:	n/a	chr10:112836706-112836719
23	MAX	chr10:112835822-112837283	H1-hESC	embryonic stem cell:	n/a	chr10:112837013-112837023 chr10:112836707-112836716
24	RAD21	chr10:112835123-112836993	SK-N-SH	brain:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539 chr10:112835233-112835246
25	RAD21	chr10:112835734-112836726	ECC-1	luminal epithelium:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
26	RAD21	chr10:112835723-112836869	MCF-7	breast:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
27	RAD21	chr10:112835697-112836982	H1-hESC	embryonic stem cell:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
28	POLR2A	chr10:112836601-112836963	H1-hESC	embryonic stem cell:	n/a	n/a
29	POLR2A	chr10:112836613-112836957	ECC-1	luminal epithelium:	n/a	n/a
30	USF1	chr10:112836594-112836785	SK-N-SH_RA	brain:	n/a	n/a
31	USF1	chr10:112836492-112836914	ECC-1	luminal epithelium:	n/a	chr10:112836493-112836509
32	CTBP2	chr10:112835669-112837158	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr10:112836434-112837232	H1-hESC	embryonic stem cell:	n/a	n/a
34	CTCF	chr10:112836560-112836710	GM12865	blood:	n/a	n/a
35	SMC3	chr10:112835621-112837181	SK-N-SH	brain:	n/a	chr10:112836970-112836980 chr10:112836521-112836535 chr10:112836525-112836535 chr10:112836044-112836058
36	E2F6	chr10:112835869-112837416	H1-hESC	embryonic stem cell:	n/a	chr10:112836146-112836153 chr10:112836146-112836153 chr10:112837296-112837305 chr10:112837053-112837063 chr10:112837056-112837066 chr10:112837052-112837061 chr10:112836116-112836125 chr10:112836146-112836153
37	CTCF	chr10:112835786-112836918	A549	lung:	n/a	chr10:112836519-112836537 chr10:112836045-112836053 chr10:112836706-112836719 chr10:112836035-112836048 chr10:112836522-112836531 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112835841-112835850 chr10:112836522-112836535
38	ZNF263	chr10:112835793-112837079	HEK293-T-REx	kidney:	n/a	chr10:112836280-112836289 chr10:112836296-112836317 chr10:112835991-112836000 chr10:112836534-112836543
39	USF2	chr10:112836552-112836887	H1-hESC	embryonic stem cell:	n/a	n/a
40	MAX	chr10:112835867-112837272	H1-hESC	embryonic stem cell:	n/a	chr10:112837013-112837023 chr10:112836707-112836716
41	GABPA	chr10:112836588-112837204	H1-hESC	embryonic stem cell:	n/a	chr10:112837001-112837010
42	TBP	chr10:112836457-112836987	H1-hESC	embryonic stem cell:	n/a	n/a
43	RAD21	chr10:112836279-112836760	SK-N-SH_RA	brain:	n/a	chr10:112836521-112836535 chr10:112836520-112836539
44	TAF1	chr10:112836477-112837041	ECC-1	luminal epithelium:	n/a	n/a
45	TAF7	chr10:112836616-112837010	H1-hESC	embryonic stem cell:	n/a	n/a
46	CTCF	chr10:112836580-112836730	GM12866	blood:	n/a	chr10:112836706-112836719
47	CTCF	chr10:112836680-112836830	HUVEC	blood vessel:	n/a	chr10:112836706-112836719
48	ZNF143	chr10:112835855-112836803	H1-hESC	embryonic stem cell:	n/a	chr10:112836546-112836564
49	CHD2	chr10:112836615-112837339	H1-hESC	embryonic stem cell:	n/a	n/a
50	GTF2F1	chr10:112836695-112836902	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:112836688-112836738	HCPEpiC	choroid plexus:	n/a
2	chr10:112836688-112836738	NB4	blood:	n/a
3	chr10:112836681-112836731	SK-N-SH_RA	brain:	n/a
4	chr10:112836681-112836731	HCPEpiC	choroid plexus:	n/a
5	chr10:112836681-112836731	NHBE	bronchial:	n/a
6	chr10:112836688-112836738	HNPCEpiC	eye:	n/a
7	chr10:112836688-112836738	Caco-2	colon:	n/a
8	chr10:112836681-112836731	AG09319	gingival:	n/a
9	chr10:112836688-112836738	PrEC	prostate:	n/a
10	chr10:112836688-112836738	NHBE	bronchial:	n/a
11	chr10:112836688-112836738	Hela-S3	cervix:	n/a
12	chr10:112836681-112836731	U87	brain:	n/a
13	chr10:112836688-112836738	MCF-7	breast:	n/a
14	chr10:112836688-112836738	U87	brain:	n/a
15	chr10:112836681-112836731	LNCaP	prostate:	n/a
16	chr10:112836681-112836731	ECC-1	luminal epithelium:	n/a
17	chr10:112836688-112836738	PFSK-1	brain:	n/a
18	chr10:112836681-112836731	HCM	heart:	n/a
19	chr10:112836688-112836738	Hepatocyte	liver:	n/a
20	chr10:112836681-112836731	HepG2	liver:	n/a
21	chr10:112836688-112836738	HPAEpiC	pulmonary alveolar:	n/a
22	chr10:112836688-112836738	T-47D	breast:	n/a
23	chr10:112836688-112836738	HRCEpiC	kidney:	n/a
24	chr10:112836688-112836738	HEEpiC	esophagus:	n/a
25	chr10:112836681-112836731	BJ	skin:	n/a
26	chr10:112836681-112836731	NB4	blood:	n/a
27	chr10:112836688-112836738	HUVEC	blood vessel:	n/a
28	chr10:112836688-112836738	GM19239	blood:	n/a
29	chr10:112836681-112836731	AoSMC	blood vessel:	n/a
30	chr10:112836688-112836738	HL-60	blood:	n/a
31	chr10:112836681-112836731	PrEC	prostate:	n/a
32	chr10:112836681-112836731	SAEC	small airway:	n/a
33	chr10:112836681-112836731	PANC-1	pancreas:	n/a
34	chr10:112836688-112836738	HCF	heart:	n/a
35	chr10:112836681-112836731	HUVEC	blood vessel:	n/a
36	chr10:112836688-112836738	AG09309	skin:	n/a
37	chr10:112836681-112836731	IMR90	lung:	fetal
38	chr10:112836688-112836738	IMR90	lung:	fetal
39	chr10:112836681-112836731	A549	lung:	n/a
40	chr10:112836681-112836731	NH-A	brain:	n/a
41	chr10:112836681-112836731	HAEpiC	amniotic membrane:	n/a
42	chr10:112836688-112836738	SK-N-SH	brain:	n/a
43	chr10:112836681-112836731	HRCEpiC	kidney:	n/a
44	chr10:112836681-112836731	HMEC	breast:	n/a
45	chr10:112836681-112836731	GM12878	blood:	n/a
46	chr10:112836681-112836731	SK-N-MC	brain:	n/a
47	chr10:112836688-112836738	SKMC	muscle:	n/a
48	chr10:112836688-112836738	GM06990	blood:	n/a
49	chr10:112836681-112836731	SK-N-SH	brain:	n/a
50	chr10:112836681-112836731	Jurkat	blood:	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112835905..112836784-chr10:113041082..113041711,3	MCF-7	breast:

Variant related genes	Relation type
ADRA2A	TF binding region
ADRA2A	CpG island

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv825566	chr10:112830014-112871333	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527400	chr10:112833561-112843085	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv896004	chr10:112834763-112842961	Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3321787	chr10:112835962-112840760	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv896005	chr10:112835992-112846298	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112835400-112837000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:112835400-112838000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:112835600-112836800	Enhancers	Spleen	Spleen
4	chr10:112835600-112837000	Flanking Active TSS	Right Ventricle	heart
5	chr10:112835600-112837200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
6	chr10:112835600-112837400	Bivalent/Poised TSS	A549	lung
7	chr10:112835600-112837800	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr10:112835600-112837800	Active TSS	Brain Angular Gyrus	brain
9	chr10:112835600-112837800	Active TSS	HSMMtube	muscle
10	chr10:112835600-112838400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr10:112835600-112838400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
12	chr10:112835600-112838400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
13	chr10:112835600-112839000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr10:112835600-112839000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr10:112835800-112836800	Active TSS	H9 Cell Line	embryonic stem cell
16	chr10:112835800-112836800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
17	chr10:112835800-112836800	Active TSS	Psoas Muscle	Psoas
18	chr10:112835800-112836800	Active TSS	Hela-S3	cervix
19	chr10:112835800-112837000	Active TSS	Right Atrium	heart
20	chr10:112835800-112837000	Bivalent/Poised TSS	NHLF	lung
21	chr10:112835800-112837200	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr10:112835800-112837400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
23	chr10:112835800-112837800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:112835800-112837800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
25	chr10:112835800-112837800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:112835800-112837800	Active TSS	Fetal Brain Male	brain
27	chr10:112835800-112837800	Active TSS	Ovary	ovary
28	chr10:112835800-112837800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
29	chr10:112835800-112837800	Flanking Bivalent TSS/Enh	Osteobl	bone
30	chr10:112835800-112838000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:112835800-112838000	Active TSS	HSMM	muscle
32	chr10:112835800-112838200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:112835800-112838200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:112835800-112838400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
35	chr10:112835800-112838400	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
36	chr10:112835800-112838400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
37	chr10:112835800-112838400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
38	chr10:112835800-112840400	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr10:112836000-112836800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
40	chr10:112836000-112836800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
41	chr10:112836000-112836800	Active TSS	Esophagus	oesophagus
42	chr10:112836000-112836800	Flanking Bivalent TSS/Enh	Placenta	Placenta
43	chr10:112836000-112837000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr10:112836000-112837000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
45	chr10:112836000-112837000	Active TSS	Fetal Brain Female	brain
46	chr10:112836000-112837200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:112836000-112837200	Active TSS	iPS-18 Cell Line	embryonic stem cell
48	chr10:112836000-112837200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:112836000-112837200	Active TSS	Duodenum Mucosa	Duodenum
50	chr10:112836000-112837200	Bivalent/Poised TSS	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links