Variant report

Variant	rs551887288
Chromosome Location	chr14:55804846-55804847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55736427..55740242-chr14:55801434..55807681,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178974	Chromatin interaction
ENSG00000258413	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv84773	chr14:55804786-55807119	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55779200-55817600	Weak transcription	Hela-S3	cervix
2	chr14:55780200-55807800	Weak transcription	Thymus	Thymus
3	chr14:55780600-55806200	Weak transcription	HMEC	breast
4	chr14:55780800-55817200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:55782000-55817200	Weak transcription	HSMM	muscle
6	chr14:55787200-55806600	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:55790400-55806800	Weak transcription	Aorta	Aorta
8	chr14:55791800-55817200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:55793000-55808600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:55794000-55811800	Weak transcription	Brain Anterior Caudate	brain
11	chr14:55795000-55806600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr14:55797800-55807800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr14:55798200-55817200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr14:55800000-55805000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr14:55800000-55806600	Weak transcription	Brain Angular Gyrus	brain
16	chr14:55800000-55806600	Weak transcription	Left Ventricle	heart
17	chr14:55800000-55806800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr14:55800000-55817200	Weak transcription	Dnd41	blood
19	chr14:55800200-55805400	Enhancers	Stomach Mucosa	stomach
20	chr14:55800600-55816200	Weak transcription	Primary B cells from cord blood	blood
21	chr14:55800600-55823600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr14:55801000-55806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:55801000-55806400	Weak transcription	Fetal Heart	heart
24	chr14:55801000-55806800	Weak transcription	HSMMtube	muscle
25	chr14:55801000-55807800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr14:55801000-55808400	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr14:55801000-55808600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr14:55801000-55817200	Weak transcription	HepG2	liver
29	chr14:55801200-55805800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr14:55801200-55806600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr14:55801200-55806600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr14:55801200-55817200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr14:55801200-55817200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr14:55801200-55817200	Weak transcription	Liver	Liver
35	chr14:55801200-55817200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr14:55801200-55842800	Weak transcription	Fetal Brain Male	brain
37	chr14:55801400-55806200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr14:55801400-55806800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr14:55801400-55817400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr14:55801400-55817400	Weak transcription	Brain Hippocampus Middle	brain
41	chr14:55801600-55806600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr14:55801600-55806600	Weak transcription	Colon Smooth Muscle	Colon
43	chr14:55801600-55806600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr14:55801600-55807000	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr14:55801600-55807200	Enhancers	Primary T cells from cord blood	blood
46	chr14:55801600-55817200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr14:55801800-55805000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr14:55801800-55805800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr14:55801800-55806400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr14:55801800-55806400	Weak transcription	Right Ventricle	heart

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