Variant report

Variant	rs551889195
Chromosome Location	chr2:167844805-167844806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv508177	chr2:167840473-167871677	Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv3019	chr2:167843982-167870745	Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2512957	chr2:167844585-167852104	Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv2390072	chr2:167844774-167851400	Flanking Active TSS Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167844400-167845200	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr2:167844600-167845000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr2:167844600-167845000	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr2:167844600-167845000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:167844600-167845000	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr2:167844600-167845200	Active TSS	H9 Cell Line	embryonic stem cell
7	chr2:167844800-167845200	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr2:167844800-167845200	Active TSS	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links