Variant report

Variant	rs551895280
Chromosome Location	chr2:179896811-179896812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949133	chr2:179711376-180124327	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv875455	chr2:179732845-179909467	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv875457	chr2:179775893-179966804	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv875458	chr2:179780624-179966804	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv875461	chr2:179843612-179900720	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv875462	chr2:179843612-179901443	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv875463	chr2:179843612-179909467	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv875464	chr2:179843612-179939493	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv875465	chr2:179843612-179966804	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv875466	chr2:179856777-179909467	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv508184	chr2:179896384-179965419	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179893000-179897000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:179894200-179897000	Enhancers	Fetal Heart	heart
3	chr2:179894800-179906800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:179895000-179897000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:179895200-179897600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr2:179895600-179897600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:179896000-179897200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr2:179896000-179897600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr2:179896200-179897200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr2:179896200-179897400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr2:179896400-179897000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr2:179896400-179897200	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr2:179896400-179897200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:179896400-179897200	Enhancers	HSMM	muscle
15	chr2:179896400-179897400	Enhancers	Fetal Thymus	thymus
16	chr2:179896400-179897400	Flanking Active TSS	Dnd41	blood
17	chr2:179896400-179897600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr2:179896400-179897600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr2:179896400-179897600	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr2:179896400-179897600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr2:179896400-179897600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr2:179896600-179897000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr2:179896600-179897000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:179896600-179897000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr2:179896600-179897000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr2:179896600-179897000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
27	chr2:179896600-179897000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr2:179896600-179897400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr2:179896600-179897400	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr2:179896600-179897400	Flanking Active TSS	HSMMtube	muscle
31	chr2:179896600-179897600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr2:179896600-179897600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr2:179896800-179897000	Flanking Active TSS	Left Ventricle	heart
34	chr2:179896800-179897000	Flanking Active TSS	Osteobl	bone
35	chr2:179896800-179897200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr2:179896800-179897200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr2:179896800-179897200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr2:179896800-179897200	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr2:179896800-179897200	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr2:179896800-179897200	Flanking Active TSS	Primary B cells from peripheral blood	blood
41	chr2:179896800-179897200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
42	chr2:179896800-179897200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr2:179896800-179897200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
44	chr2:179896800-179897200	Active TSS	Adipose Nuclei	Adipose
45	chr2:179896800-179897200	Active TSS	Colonic Mucosa	Colon
46	chr2:179896800-179897200	Enhancers	Fetal Muscle Leg	muscle
47	chr2:179896800-179897200	Enhancers	Fetal Stomach	stomach
48	chr2:179896800-179897200	Enhancers	Psoas Muscle	Psoas
49	chr2:179896800-179897200	Active TSS	Rectal Mucosa Donor 29	rectum
50	chr2:179896800-179897200	Flanking Active TSS	Right Atrium	heart

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