Variant report

Variant	rs551919388
Chromosome Location	chr1:179095361-179095362
allele	-/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179095025..179097028-chr1:179098926..179100910,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012667	chr1:179094571-179120280	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1002253	chr1:179094571-179120938	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179053200-179096000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:179059200-179096400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:179063200-179112000	Weak transcription	Fetal Kidney	kidney
4	chr1:179064800-179097800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:179075400-179096200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:179078600-179097600	Weak transcription	Stomach Mucosa	stomach
7	chr1:179079600-179109800	Weak transcription	Small Intestine	intestine
8	chr1:179080000-179097800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:179080000-179097800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:179080000-179098600	Weak transcription	Esophagus	oesophagus
11	chr1:179080200-179095800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr1:179080200-179101600	Weak transcription	Fetal Brain Male	brain
13	chr1:179080400-179103800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:179080800-179098400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr1:179080800-179099000	Weak transcription	Colonic Mucosa	Colon
16	chr1:179080800-179099000	Weak transcription	Spleen	Spleen
17	chr1:179086400-179095400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:179086600-179105000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr1:179086800-179099000	Weak transcription	Right Ventricle	heart
20	chr1:179087800-179097800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr1:179087800-179113000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr1:179088000-179096400	Weak transcription	Brain Substantia Nigra	brain
23	chr1:179088000-179097800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr1:179088000-179098400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr1:179088000-179098600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr1:179088000-179099000	Weak transcription	Aorta	Aorta
27	chr1:179088200-179095400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr1:179088200-179097800	Weak transcription	Primary B cells from cord blood	blood
29	chr1:179088200-179098800	Weak transcription	Brain Hippocampus Middle	brain
30	chr1:179088200-179102400	Weak transcription	Brain Germinal Matrix	brain
31	chr1:179088400-179099200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr1:179088400-179099400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr1:179088600-179096800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr1:179088600-179098800	Weak transcription	Ovary	ovary
35	chr1:179088600-179098800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr1:179089000-179097800	Weak transcription	Primary B cells from peripheral blood	blood
37	chr1:179089200-179098400	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr1:179089200-179099400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr1:179089400-179097600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr1:179089400-179098400	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr1:179089400-179098400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr1:179089600-179099000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr1:179090000-179096000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr1:179090800-179095400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr1:179090800-179095600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr1:179090800-179097200	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr1:179090800-179097800	Weak transcription	K562	blood
48	chr1:179090800-179098400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr1:179090800-179099200	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr1:179090800-179104400	Weak transcription	Fetal Brain Female	brain

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