Variant report

Variant	rs551924134
Chromosome Location	chr10:28563423-28563424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28558708..28561649-chr10:28562731..28565545,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv1040916	chr10:28558982-28579141	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
7	nsv466856	chr10:28562647-28571860	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv470929	chr10:28562647-28571860	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv550285	chr10:28562647-28571860	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv818752	chr10:28562647-28571860	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv437663	chr10:28562647-28585496	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28550400-28582600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr10:28550600-28563600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr10:28551400-28563600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr10:28553000-28570800	Weak transcription	Esophagus	oesophagus
5	chr10:28553200-28568400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:28553400-28569600	Weak transcription	Pancreas	Pancrea
7	chr10:28556200-28570800	Weak transcription	Primary B cells from cord blood	blood
8	chr10:28556400-28563800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:28556400-28571000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:28557600-28567800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr10:28557800-28568000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:28558200-28568200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:28559600-28570800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:28560400-28567800	Weak transcription	Fetal Heart	heart
15	chr10:28562600-28563800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr10:28562600-28570800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:28563400-28564000	Enhancers	HepG2	liver
18	chr10:28563400-28564200	Enhancers	Primary T cells from cord blood	blood
19	chr10:28563400-28564200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr10:28563400-28564200	Enhancers	Colon Smooth Muscle	Colon
21	chr10:28563400-28564800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr10:28563400-28565000	Enhancers	Primary T helper cells PMA-I stimulated	--

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