Variant report

Variant	rs551942052
Chromosome Location	chr8:99440009-99440010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831406	chr8:99290745-99482076	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1034492	chr8:99436341-99456516	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3411915	chr8:99438076-99441174	ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3340095	chr8:99438601-99441149	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99438000-99440200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:99438000-99440600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr8:99438000-99440600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:99438000-99441200	ZNF genes & repeats	Spleen	Spleen
5	chr8:99438200-99440200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:99438400-99440400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr8:99438400-99440400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
8	chr8:99438400-99440600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
9	chr8:99438400-99440600	Bivalent Enhancer	Lung	lung
10	chr8:99438600-99440200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
11	chr8:99438600-99440200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:99438600-99440200	Bivalent/Poised TSS	A549	lung
13	chr8:99438600-99440200	Bivalent/Poised TSS	Osteobl	bone
14	chr8:99438600-99440400	Bivalent/Poised TSS	Fetal Brain Female	brain
15	chr8:99438600-99440600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
16	chr8:99438600-99440800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr8:99438800-99440200	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:99438800-99440400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
19	chr8:99438800-99440400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
20	chr8:99438800-99440400	Active TSS	Brain Anterior Caudate	brain
21	chr8:99439000-99440400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr8:99439200-99440400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
23	chr8:99439400-99440400	Bivalent Enhancer	Adipose Nuclei	Adipose
24	chr8:99439400-99440400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr8:99439600-99440200	Bivalent Enhancer	Esophagus	oesophagus
26	chr8:99439600-99440200	Bivalent Enhancer	Placenta	Placenta
27	chr8:99439600-99440200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
28	chr8:99439600-99440400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr8:99439600-99440400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:99439600-99440400	Enhancers	Pancreas	Pancrea
31	chr8:99439600-99440600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
32	chr8:99439600-99442200	Weak transcription	Right Atrium	heart
33	chr8:99439800-99440200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr8:99439800-99440200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
35	chr8:99439800-99440200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr8:99439800-99440200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:99439800-99440200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr8:99439800-99440200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr8:99439800-99440200	Bivalent Enhancer	Fetal Brain Male	brain
40	chr8:99439800-99440200	Bivalent Enhancer	Fetal Lung	lung
41	chr8:99439800-99440200	Bivalent Enhancer	Fetal Muscle Leg	muscle
42	chr8:99439800-99440200	Bivalent Enhancer	Fetal Stomach	stomach
43	chr8:99439800-99440200	Flanking Active TSS	Gastric	stomach
44	chr8:99439800-99440400	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr8:99439800-99440400	Enhancers	Fetal Heart	heart
46	chr8:99440000-99440200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
47	chr8:99440000-99440200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr8:99440000-99440200	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr8:99440000-99440200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
50	chr8:99440000-99440200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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