Variant report

Variant	rs551943172
Chromosome Location	chr3:143608522-143608523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2509262	chr3:143607895-143609361	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2277399	chr3:143608330-143608886	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3462591	chr3:143608350-143608813	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3462589	chr3:143608436-143608773	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3462592	chr3:143608454-143608721	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3462590	chr3:143608501-143608706	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3462593	chr3:143608517-143608703	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143603600-143616800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:143606800-143608800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:143606800-143608800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:143607000-143608600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:143607000-143609000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:143607200-143608600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:143607200-143608600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:143607200-143609000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:143607600-143608800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr3:143607600-143611200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:143607800-143608800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr3:143608200-143609000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr3:143608400-143608600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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