Variant report

Variant	rs551952050
Chromosome Location	chr7:107210396-107210397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107209715..107211538-chr7:107214457..107216684,2	MCF-7	breast:
2	chr7:107202798..107206022-chr7:107208738..107213225,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105865	Chromatin interaction
ENSG00000164597	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv482365	chr7:107122401-107271861	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv608074	chr7:107179131-107260856	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv888940	chr7:107210383-107229618	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107204800-107210600	Weak transcription	Spleen	Spleen
2	chr7:107205000-107210600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:107205000-107219600	Weak transcription	Pancreas	Pancrea
4	chr7:107205000-107220000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:107205000-107220000	Weak transcription	Gastric	stomach
6	chr7:107205000-107220200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:107205000-107220200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:107205200-107210400	Weak transcription	Fetal Thymus	thymus
9	chr7:107205200-107210600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr7:107205200-107210600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:107205200-107210600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr7:107205200-107210600	Weak transcription	Fetal Muscle Leg	muscle
13	chr7:107205200-107210600	Weak transcription	Placenta	Placenta
14	chr7:107205200-107210600	Weak transcription	Left Ventricle	heart
15	chr7:107205200-107210800	Weak transcription	Ovary	ovary
16	chr7:107205200-107219600	Weak transcription	Esophagus	oesophagus
17	chr7:107205200-107219600	Weak transcription	Right Ventricle	heart
18	chr7:107205200-107220000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:107205200-107220000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:107205200-107220000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:107205200-107220000	Weak transcription	Lung	lung
22	chr7:107205200-107220000	Weak transcription	Psoas Muscle	Psoas
23	chr7:107205400-107210600	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr7:107205400-107210800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr7:107205400-107211800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr7:107205400-107219800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr7:107205400-107220000	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr7:107205400-107220000	Weak transcription	Colonic Mucosa	Colon
29	chr7:107205400-107220000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr7:107205600-107210400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr7:107205600-107210400	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr7:107205600-107210600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr7:107205600-107210600	Weak transcription	Fetal Brain Female	brain
34	chr7:107205600-107210800	Weak transcription	Adipose Nuclei	Adipose
35	chr7:107205600-107210800	Weak transcription	Liver	Liver
36	chr7:107205600-107210800	Weak transcription	Fetal Intestine Large	intestine
37	chr7:107205600-107211600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr7:107205600-107211600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr7:107205600-107211800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr7:107205600-107211800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr7:107205600-107214000	Weak transcription	Small Intestine	intestine
42	chr7:107205600-107215200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr7:107205600-107215400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr7:107205600-107215400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr7:107205600-107219600	Weak transcription	Aorta	Aorta
46	chr7:107205600-107219600	Weak transcription	Fetal Stomach	stomach
47	chr7:107205600-107219600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr7:107205600-107219800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr7:107205600-107220000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr7:107205600-107220000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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