Variant report

Variant	rs551961680
Chromosome Location	chr4:110627068-110627069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:110623773-110633628	K562	blood:	n/a	n/a

Variant related genes	Relation type
CASP6	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv595142	chr4:110609481-110656730	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3410293	chr4:110626453-110628351	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110624600-110637000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:110625000-110632000	Weak transcription	HSMM	muscle
3	chr4:110625000-110632200	Weak transcription	Left Ventricle	heart
4	chr4:110625000-110632600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:110625000-110633800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:110625000-110633800	Weak transcription	Lung	lung
7	chr4:110625000-110634000	Weak transcription	Gastric	stomach
8	chr4:110625000-110634200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:110625000-110634200	Weak transcription	HSMMtube	muscle
10	chr4:110625000-110635400	Weak transcription	Psoas Muscle	Psoas
11	chr4:110625000-110637200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr4:110625000-110637200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:110625000-110638000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr4:110625000-110638200	Weak transcription	Esophagus	oesophagus
15	chr4:110625000-110640200	Weak transcription	Aorta	Aorta
16	chr4:110625000-110641800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:110625000-110649200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:110625000-110649400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:110625000-110650400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:110625000-110650400	Weak transcription	Spleen	Spleen
21	chr4:110625200-110628600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr4:110625200-110628800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr4:110625200-110629000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:110625200-110629200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr4:110625200-110629400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr4:110625200-110629600	Weak transcription	Ovary	ovary
27	chr4:110625200-110631800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr4:110625200-110632000	Weak transcription	Fetal Brain Female	brain
29	chr4:110625200-110632400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr4:110625200-110632400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:110625200-110632600	Weak transcription	Brain Anterior Caudate	brain
32	chr4:110625200-110633000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr4:110625200-110633000	Weak transcription	Right Ventricle	heart
34	chr4:110625200-110634000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr4:110625200-110634000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr4:110625200-110634000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr4:110625200-110634000	Weak transcription	Fetal Brain Male	brain
38	chr4:110625200-110634200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr4:110625200-110634400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:110625200-110634600	Weak transcription	NHDF-Ad	bronchial
41	chr4:110625200-110635600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr4:110625200-110637600	Weak transcription	Brain Angular Gyrus	brain
43	chr4:110625200-110637800	Weak transcription	Fetal Thymus	thymus
44	chr4:110625200-110640600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr4:110625200-110642400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr4:110625200-110649200	Weak transcription	Rectal Smooth Muscle	rectum
47	chr4:110625200-110649200	Weak transcription	NH-A	brain
48	chr4:110625200-110650200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr4:110625200-110650200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr4:110625400-110628800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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