Variant report

Variant	rs551996792
Chromosome Location	chr11:104915820-104915821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv3385159	chr11:104786549-105051555	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv468863	chr11:104875261-104918517	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
9	nsv556219	chr11:104875261-104918517	Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
10	esv2757475	chr11:104895876-104979717	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv2759863	chr11:104895876-104979717	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv983059	chr11:104914933-104916043	Active TSS Flanking Active TSS Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
13	nsv517089	chr11:104915563-104930676	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
14	nsv32343	chr11:104915820-104915821	Active TSS Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104912600-104917800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:104912600-104920800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:104913000-104916200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
4	chr11:104913600-104916200	Active TSS	Hela-S3	cervix
5	chr11:104913600-104916400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:104913600-104916600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:104913800-104916000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:104913800-104916200	Active TSS	Primary T cells fromperipheralblood	blood
9	chr11:104914000-104916200	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr11:104914000-104916600	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr11:104914200-104916000	Active TSS	Lung	lung
12	chr11:104914200-104916000	Active TSS	Right Ventricle	heart
13	chr11:104914200-104916000	Active TSS	GM12878-XiMat	blood
14	chr11:104914200-104916200	Active TSS	Colonic Mucosa	Colon
15	chr11:104914200-104916400	Active TSS	Ovary	ovary
16	chr11:104914200-104916400	Flanking Active TSS	HUVEC	blood vessel
17	chr11:104914200-104916600	Active TSS	Rectal Smooth Muscle	rectum
18	chr11:104914400-104916200	Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr11:104914400-104916400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr11:104914400-104916400	Active TSS	Brain Hippocampus Middle	brain
21	chr11:104914400-104916400	Active TSS	Fetal Muscle Leg	muscle
22	chr11:104914400-104916400	Active TSS	Stomach Smooth Muscle	stomach
23	chr11:104914600-104916200	Active TSS	Primary monocytes fromperipheralblood	blood
24	chr11:104914600-104916200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:104914600-104916200	Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr11:104914600-104916200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:104914600-104916200	Active TSS	Fetal Lung	lung
28	chr11:104914600-104916200	Active TSS	Left Ventricle	heart
29	chr11:104914600-104916200	Active TSS	Thymus	Thymus
30	chr11:104914600-104916200	Active TSS	Monocytes-CD14+_RO01746	blood
31	chr11:104914600-104916200	Active TSS	NHLF	lung
32	chr11:104914600-104916400	Active TSS	Right Atrium	heart
33	chr11:104914600-104916600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:104914600-104918000	Weak transcription	Gastric	stomach
35	chr11:104914600-104918000	Weak transcription	Spleen	Spleen
36	chr11:104914800-104916200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
37	chr11:104914800-104916200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
38	chr11:104914800-104916200	Active TSS	Duodenum Mucosa	Duodenum
39	chr11:104914800-104916200	Active TSS	Fetal Intestine Small	intestine
40	chr11:104915000-104916000	Active TSS	Sigmoid Colon	Sigmoid Colon
41	chr11:104915000-104916200	Active TSS	Primary T cells from cord blood	blood
42	chr11:104915000-104916200	Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr11:104915000-104916200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
44	chr11:104915000-104916200	Active TSS	Liver	Liver
45	chr11:104915000-104916200	Active TSS	Brain Substantia Nigra	brain
46	chr11:104915000-104916200	Active TSS	Small Intestine	intestine
47	chr11:104915200-104916000	Active TSS	Primary neutrophils fromperipheralblood	blood
48	chr11:104915200-104916200	Active TSS	Rectal Mucosa Donor 31	rectum
49	chr11:104915200-104916400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:104915400-104916000	Active TSS	Primary B cells from peripheral blood	blood

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