Variant report

Variant	rs552002221
Chromosome Location	chr2:86943254-86943255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv961802	chr2:86933414-86958321	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv10063	chr2:86940988-87084360	Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86941800-86946800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:86942400-86943400	Weak transcription	HepG2	liver
3	chr2:86942400-86946200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:86942400-86946800	Weak transcription	Fetal Intestine Small	intestine
5	chr2:86942600-86944600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr2:86942600-86946600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr2:86942600-86946600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr2:86942600-86946600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr2:86942600-86946800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr2:86943200-86946800	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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