Variant report

Variant rs552027937
Chromosome Location chr9:117048917-117048918
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:117005000-117050200 Weak transcription HUES48 Cell Line embryonic stem cell
2 chr9:117012400-117054400 Weak transcription Duodenum Smooth Muscle Duodenum
3 chr9:117013400-117067800 Weak transcription Right Ventricle heart
4 chr9:117026600-117057000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr9:117026800-117050000 Weak transcription H9 Cell Line embryonic stem cell
6 chr9:117027800-117056800 Weak transcription Colon Smooth Muscle Colon
7 chr9:117028200-117077000 Weak transcription Gastric stomach
8 chr9:117038200-117052800 Weak transcription Stomach Mucosa stomach
9 chr9:117039400-117049400 Weak transcription Breast Myoepithelial Primary Cells Breast
10 chr9:117039800-117076600 Weak transcription Lung lung
11 chr9:117040200-117053000 Weak transcription Skeletal Muscle Female skeletal muscle
12 chr9:117041800-117061800 Weak transcription Aorta Aorta
13 chr9:117042000-117050000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr9:117043000-117051000 Strong transcription HepG2 liver
15 chr9:117043200-117051800 Strong transcription Liver Liver
16 chr9:117043400-117051800 Genic enhancers Fetal Muscle Leg muscle
17 chr9:117043400-117053800 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr9:117043800-117053800 Genic enhancers Fetal Muscle Trunk muscle
19 chr9:117043800-117074800 Strong transcription Fetal Intestine Large intestine
20 chr9:117043800-117075200 Weak transcription Rectal Smooth Muscle rectum
21 chr9:117044200-117057600 Weak transcription Right Atrium heart
22 chr9:117044400-117057000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
23 chr9:117044800-117055000 Strong transcription Fetal Intestine Small intestine
24 chr9:117045600-117049200 Weak transcription Fetal Thymus thymus
25 chr9:117045600-117050000 Weak transcription ES-I3 Cell Line embryonic stem cell
26 chr9:117045800-117050200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr9:117046000-117050400 Strong transcription Cortex derived primary cultured neurospheres brain
28 chr9:117046000-117051000 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
29 chr9:117046200-117050200 Weak transcription iPS-18 Cell Line embryonic stem cell
30 chr9:117046200-117057000 Weak transcription Brain Substantia Nigra brain
31 chr9:117046400-117050600 Weak transcription Spleen Spleen
32 chr9:117046600-117050200 Weak transcription iPS-20b Cell Line embryonic stem cell
33 chr9:117046600-117051200 Genic enhancers Fetal Stomach stomach
34 chr9:117046800-117049800 Weak transcription HMEC breast
35 chr9:117047000-117050600 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr9:117047400-117049000 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
37 chr9:117047400-117051800 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr9:117047400-117054200 Weak transcription Pancreas Pancrea
39 chr9:117047600-117050000 Weak transcription Stomach Smooth Muscle stomach
40 chr9:117047600-117050600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr9:117047600-117051400 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
42 chr9:117047600-117054400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr9:117047600-117056600 Weak transcription iPS-15b Cell Line embryonic stem cell
44 chr9:117047800-117050000 Weak transcription HUES6 Cell Line embryonic stem cell
45 chr9:117047800-117050200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr9:117047800-117057000 Weak transcription Adipose Nuclei Adipose
47 chr9:117047800-117057000 Weak transcription Duodenum Mucosa Duodenum
48 chr9:117048000-117050000 Weak transcription H1 Cell Line embryonic stem cell
49 chr9:117048000-117050000 Weak transcription Esophagus oesophagus
50 chr9:117048200-117049400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin

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