Variant report

Variant	rs552044460
Chromosome Location	chr5:177099047-177099048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv883182	chr5:176980995-177322056	Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv969021	chr5:177060702-177111251	Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3343343	chr5:177097871-177100719	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	esv3385471	chr5:177098196-177106694	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177097400-177099600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
2	chr5:177097400-177100600	Weak transcription	Primary B cells from cord blood	blood
3	chr5:177097600-177099200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:177098200-177099200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:177098200-177099200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr5:177098200-177099200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:177098200-177099200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:177098200-177099200	Active TSS	Primary T cells fromperipheralblood	blood
9	chr5:177098200-177099200	Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr5:177098200-177099200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:177098200-177099200	Active TSS	Muscle Satellite Cultured Cells	--
12	chr5:177098200-177099200	Active TSS	Brain Cingulate Gyrus	brain
13	chr5:177098200-177099200	Active TSS	Brain Hippocampus Middle	brain
14	chr5:177098200-177099200	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr5:177098200-177099200	Active TSS	Fetal Brain Female	brain
16	chr5:177098200-177099200	Active TSS	Rectal Mucosa Donor 31	rectum
17	chr5:177098200-177099200	Active TSS	Stomach Smooth Muscle	stomach
18	chr5:177098200-177099200	Active TSS	NHEK	skin
19	chr5:177098200-177099400	Active TSS	H9 Cell Line	embryonic stem cell
20	chr5:177098200-177099400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:177098200-177099400	Active TSS	Fetal Muscle Leg	muscle
22	chr5:177098200-177099400	Active TSS	Left Ventricle	heart
23	chr5:177098200-177099400	Active TSS	Pancreas	Pancrea
24	chr5:177098200-177099400	Active TSS	Psoas Muscle	Psoas
25	chr5:177098200-177099600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:177098200-177099600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr5:177098200-177099600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:177098200-177099600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:177098200-177099600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:177098200-177099600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr5:177098200-177099600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr5:177098200-177099600	Active TSS	Brain Germinal Matrix	brain
33	chr5:177098200-177099600	Active TSS	Fetal Stomach	stomach
34	chr5:177098200-177099600	Active TSS	Ovary	ovary
35	chr5:177098200-177099600	Active TSS	HSMM	muscle
36	chr5:177098200-177099600	Active TSS	Monocytes-CD14+_RO01746	blood
37	chr5:177098400-177099200	Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr5:177098400-177099200	Active TSS	Primary B cells from peripheral blood	blood
39	chr5:177098400-177099400	Active TSS	H1 Cell Line	embryonic stem cell
40	chr5:177098400-177099400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr5:177098400-177099600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr5:177098400-177099600	Active TSS	Adipose Nuclei	Adipose
43	chr5:177098400-177099600	Active TSS	Dnd41	blood
44	chr5:177098600-177099200	Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr5:177098800-177099800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr5:177099000-177099400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr5:177099000-177099400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr5:177099000-177099400	Active TSS	Aorta	Aorta
49	chr5:177099000-177099400	Active TSS	Esophagus	oesophagus
50	chr5:177099000-177099400	Active TSS	Pancreatic Islets	Pancreatic Islet

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