Variant report

Variant	rs552047028
Chromosome Location	chr10:25337342-25337343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25304583..25307026-chr10:25335686..25338076,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction
ENSG00000151023	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25335600-25338000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:25336000-25337800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:25336000-25337800	Enhancers	HMEC	breast
4	chr10:25336000-25338000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:25336000-25338000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:25336200-25337400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr10:25336200-25337600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:25336200-25337600	Enhancers	Osteobl	bone
9	chr10:25336200-25337800	Enhancers	NHEK	skin
10	chr10:25336200-25338200	Enhancers	Fetal Intestine Small	intestine
11	chr10:25336400-25337400	Weak transcription	Fetal Brain Female	brain
12	chr10:25336400-25337600	Enhancers	HSMM	muscle
13	chr10:25336400-25338200	Enhancers	Brain Anterior Caudate	brain
14	chr10:25336600-25337400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:25336600-25338000	Enhancers	HSMMtube	muscle
16	chr10:25337000-25337400	Flanking Active TSS	K562	blood
17	chr10:25337000-25337400	Enhancers	NH-A	brain
18	chr10:25337000-25338000	Enhancers	Brain Substantia Nigra	brain
19	chr10:25337000-25338200	Enhancers	Fetal Intestine Large	intestine
20	chr10:25337200-25337400	Enhancers	Placenta Amnion	Placenta Amnion
21	chr10:25337200-25337600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:25337200-25337600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
23	chr10:25337200-25337800	Enhancers	Ovary	ovary
24	chr10:25337200-25338200	Enhancers	Duodenum Mucosa	Duodenum

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