Variant report

Variant	rs552050708
Chromosome Location	chr6:101001525-101001526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv886444	chr6:100961198-101084946	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604263	chr6:100980874-101078718	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv463986	chr6:100995048-101084946	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv604264	chr6:100995048-101084946	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1028016	chr6:101001055-101158822	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100960800-101035000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:100964200-101020000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:100965200-101011400	Weak transcription	Pancreas	Pancrea
4	chr6:100965400-101005000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:100965600-101033600	Weak transcription	Ovary	ovary
6	chr6:100966000-101002400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:100978200-101008200	Weak transcription	NHDF-Ad	bronchial
8	chr6:100978600-101019400	Weak transcription	HMEC	breast
9	chr6:100979800-101018200	Weak transcription	Primary T cells from cord blood	blood
10	chr6:100986400-101005600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:100988000-101019000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:100988200-101001800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:100988200-101018800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:100988200-101035000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:100988200-101035000	Weak transcription	GM12878-XiMat	blood
16	chr6:100988400-101005000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:100988800-101008400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:100988800-101034200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:100989000-101018400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:100990600-101018200	Weak transcription	Left Ventricle	heart
21	chr6:100996800-101016000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:100997400-101008400	Weak transcription	NH-A	brain
23	chr6:100997600-101017000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:100997800-101015400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:100997800-101018000	Weak transcription	Dnd41	blood
26	chr6:100998000-101008200	Weak transcription	HSMM	muscle
27	chr6:100998000-101008600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:100998200-101015800	Weak transcription	Primary B cells from cord blood	blood
29	chr6:101000800-101001600	Enhancers	Brain Cingulate Gyrus	brain
30	chr6:101000800-101002000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:101000800-101002600	Enhancers	Fetal Kidney	kidney
32	chr6:101001000-101001600	Enhancers	Brain Angular Gyrus	brain
33	chr6:101001000-101001600	Enhancers	HSMMtube	muscle
34	chr6:101001000-101034000	Weak transcription	Fetal Intestine Large	intestine
35	chr6:101001200-101001600	Enhancers	Muscle Satellite Cultured Cells	--
36	chr6:101001200-101001600	Enhancers	Brain Anterior Caudate	brain
37	chr6:101001200-101001600	Enhancers	Brain Germinal Matrix	brain
38	chr6:101001200-101001600	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr6:101001200-101001600	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr6:101001200-101001800	Enhancers	Brain Substantia Nigra	brain
41	chr6:101001200-101001800	Weak transcription	Fetal Heart	heart
42	chr6:101001200-101002000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:101001200-101002400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr6:101001200-101002400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:101001200-101002400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr6:101001200-101002600	Enhancers	Liver	Liver
47	chr6:101001400-101001600	Enhancers	Fetal Intestine Small	intestine
48	chr6:101001400-101001600	Enhancers	Small Intestine	intestine
49	chr6:101001400-101002000	Enhancers	Brain Hippocampus Middle	brain
50	chr6:101001400-101002400	Enhancers	A549	lung

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