Variant report

Variant	rs552051896
Chromosome Location	chr18:29888699-29888700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29887452..29890348-chr18:30046410..30049276,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv528846	chr18:29832147-29890042	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv576637	chr18:29885871-29889172	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1833771	chr18:29885871-29889203	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1835867	chr18:29885871-29889203	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2632529	chr18:29887409-29889983	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv11116	chr18:29887462-29889647	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv828205	chr18:29887462-29889647	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3317372	chr18:29887561-29889845	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2517711	chr18:29887850-29890139	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv9623	chr18:29887856-29889746	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv821392	chr18:29887916-29889637	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv2159930	chr18:29887978-29889686	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1842457	chr18:29888043-29889203	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3317371	chr18:29888080-29889572	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3317373	chr18:29888080-29889572	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv14632	chr18:29888110-29889257	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv828206	chr18:29888160-29889443	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv12965	chr18:29888294-29889647	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv820046	chr18:29888433-29889728	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv2656098	chr18:29888503-29889203	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv2656185	chr18:29888503-29889203	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv2656282	chr18:29888503-29889203	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv17226	chr18:29888571-29889242	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv576638	chr18:29888660-29889172	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv576639	chr18:29888660-29891593	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29868000-29888800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr18:29868000-29888800	Weak transcription	Brain Hippocampus Middle	brain
3	chr18:29868000-29889000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr18:29868000-29889000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr18:29868200-29889800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr18:29868200-29923800	Weak transcription	Gastric	stomach
7	chr18:29878400-29888800	Weak transcription	Liver	Liver
8	chr18:29878400-29890000	Weak transcription	Fetal Kidney	kidney
9	chr18:29878400-29896000	Weak transcription	Brain Anterior Caudate	brain
10	chr18:29878600-29890200	Weak transcription	Brain Angular Gyrus	brain
11	chr18:29878800-29890000	Weak transcription	Fetal Brain Male	brain
12	chr18:29880800-29897000	Weak transcription	Lung	lung
13	chr18:29881600-29892200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr18:29881800-29888800	Weak transcription	Fetal Stomach	stomach
15	chr18:29882200-29888800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr18:29882200-29888800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr18:29882200-29890000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr18:29882800-29888800	Weak transcription	Small Intestine	intestine
19	chr18:29882800-29889000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr18:29882800-29890000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr18:29883000-29888800	Weak transcription	HSMMtube	muscle
22	chr18:29883000-29890800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr18:29883000-29891400	Weak transcription	Adipose Nuclei	Adipose
24	chr18:29883000-29891600	Weak transcription	Pancreas	Pancrea
25	chr18:29883000-29895800	Weak transcription	Stomach Mucosa	stomach
26	chr18:29883000-29897000	Weak transcription	Fetal Intestine Small	intestine
27	chr18:29883000-29897000	Weak transcription	Left Ventricle	heart
28	chr18:29883200-29889000	Weak transcription	NHDF-Ad	bronchial
29	chr18:29883400-29889000	Weak transcription	Fetal Muscle Leg	muscle
30	chr18:29883400-29896800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr18:29883800-29888800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr18:29883800-29888800	Weak transcription	Aorta	Aorta
33	chr18:29883800-29888800	Weak transcription	Right Atrium	heart
34	chr18:29883800-29888800	Weak transcription	Right Ventricle	heart
35	chr18:29883800-29893000	Weak transcription	Fetal Heart	heart
36	chr18:29886400-29889200	Weak transcription	Spleen	Spleen
37	chr18:29886600-29892000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr18:29887400-29890200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr18:29888000-29888800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr18:29888000-29889400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr18:29888000-29891200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr18:29888200-29889000	Enhancers	HSMM	muscle
43	chr18:29888200-29889400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr18:29888200-29889400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr18:29888200-29890400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr18:29888200-29891000	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr18:29888400-29889600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr18:29888600-29888800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
49	chr18:29888600-29888800	Active TSS	HMEC	breast
50	chr18:29888600-29889200	Enhancers	HUES64 Cell Line	embryonic stem cell

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