Variant report

Variant	rs552082358
Chromosome Location	chr14:25561623-25561624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3490801	chr14:25560793-25675699	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3490802	chr14:25560793-25675699	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25558200-25563600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr14:25558600-25561800	Enhancers	HSMM	muscle
3	chr14:25559600-25561800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr14:25559600-25564200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr14:25560400-25562400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:25560400-25565000	Weak transcription	Stomach Mucosa	stomach
7	chr14:25560600-25562400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr14:25560600-25563000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:25560600-25563000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:25560600-25563000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:25560600-25563000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr14:25560600-25563400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr14:25560600-25563600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:25560600-25564600	Weak transcription	Fetal Intestine Large	intestine
15	chr14:25560600-25565000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:25560600-25565000	Weak transcription	Fetal Heart	heart
17	chr14:25560800-25562200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr14:25560800-25562400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:25560800-25563400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:25561400-25562000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr14:25561400-25563400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr14:25561400-25564600	Weak transcription	Fetal Intestine Small	intestine
23	chr14:25561600-25561800	Enhancers	Pancreas	Pancrea
24	chr14:25561600-25561800	Enhancers	HSMMtube	muscle
25	chr14:25561600-25562800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr14:25561600-25563600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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