Variant report

Variant	rs552084524
Chromosome Location	chr7:117928472-117928473
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889090	chr7:117865940-118067460	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv889091	chr7:117899190-117963926	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1029103	chr7:117917362-118035987	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2764014	chr7:117917374-118035999	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv608261	chr7:117917719-117965390	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv518701	chr7:117921267-117928764	Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv608262	chr7:117926753-118036133	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117926600-117929000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr7:117926800-117928600	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr7:117927000-117928600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr7:117927000-117929000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr7:117927200-117928600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:117927200-117929000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr7:117927400-117928600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr7:117927400-117928800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr7:117927400-117929000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:117927400-117931400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
11	chr7:117927600-117928600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
12	chr7:117927600-117928600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr7:117927600-117929000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr7:117927800-117928600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:117927800-117929000	Enhancers	Primary hematopoietic stem cells	blood
16	chr7:117928000-117928600	Flanking Active TSS	Dnd41	blood
17	chr7:117928000-117928600	Enhancers	HUVEC	blood vessel
18	chr7:117928000-117928600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
19	chr7:117928200-117928600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:117928400-117928600	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
21	chr7:117928400-117928600	Enhancers	GM12878-XiMat	blood
22	chr7:117928400-117929000	Bivalent Enhancer	Primary T cells from cord blood	blood
23	chr7:117928400-117929200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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