The 2.0 version of rSNPBase

Variant report

Variant rs552096405
Chromosome Location chr19:44731960-44731961
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:44717400-44739000 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr19:44717600-44739600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr19:44717800-44732200 Weak transcription Stomach Mucosa stomach
4 chr19:44718200-44732400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr19:44718200-44732400 Weak transcription K562 blood
6 chr19:44718200-44732600 Weak transcription HepG2 liver
7 chr19:44718200-44732800 Weak transcription HMEC breast
8 chr19:44718200-44738800 Weak transcription Hela-S3 cervix
9 chr19:44718400-44732400 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr19:44718400-44736400 Weak transcription HUVEC blood vessel
11 chr19:44722000-44732000 Weak transcription Colonic Mucosa Colon
12 chr19:44722000-44732400 Weak transcription Fetal Heart heart
13 chr19:44722800-44732000 Weak transcription Brain Cingulate Gyrus brain
14 chr19:44723200-44732400 Weak transcription Muscle Satellite Cultured Cells --
15 chr19:44723600-44732000 Weak transcription Brain Hippocampus Middle brain
16 chr19:44723600-44732400 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr19:44723600-44732600 Weak transcription Brain Angular Gyrus brain
18 chr19:44723600-44732600 Weak transcription NHLF lung
19 chr19:44723600-44738000 Weak transcription NHEK skin
20 chr19:44723800-44732400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr19:44723800-44732400 Weak transcription HSMM muscle
22 chr19:44723800-44732600 Weak transcription Osteobl bone
23 chr19:44723800-44735800 Weak transcription NH-A brain
24 chr19:44729800-44733600 ZNF genes & repeats Brain Germinal Matrix brain
25 chr19:44729800-44734800 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
26 chr19:44729800-44735000 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
27 chr19:44729800-44735800 ZNF genes & repeats Primary monocytes fromperipheralblood blood
28 chr19:44729800-44741000 ZNF genes & repeats Lung lung
29 chr19:44729800-44768600 ZNF genes & repeats Adipose Nuclei Adipose
30 chr19:44730000-44732800 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr19:44730000-44733000 ZNF genes & repeats Skeletal Muscle Male skeletal muscle
32 chr19:44730000-44733200 ZNF genes & repeats Duodenum Mucosa Duodenum
33 chr19:44730000-44735000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr19:44730000-44737000 ZNF genes & repeats Fetal Muscle Leg muscle
35 chr19:44730000-44741200 ZNF genes & repeats Ovary ovary
36 chr19:44730000-44741400 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
37 chr19:44730000-44742000 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
38 chr19:44730000-44743600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr19:44730000-44745000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr19:44730000-44775600 ZNF genes & repeats Liver Liver
41 chr19:44730200-44733200 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
42 chr19:44730200-44733200 ZNF genes & repeats Fetal Muscle Trunk muscle
43 chr19:44730200-44733400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr19:44730200-44736400 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr19:44730200-44736400 ZNF genes & repeats Fetal Brain Female brain
46 chr19:44730200-44739600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
47 chr19:44730200-44741200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
48 chr19:44730200-44741200 ZNF genes & repeats Aorta Aorta
49 chr19:44730200-44743000 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
50 chr19:44730200-44743400 ZNF genes & repeats Fetal Lung lung

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Last update: Aug 31, 2015