Variant report

Variant	rs552099640
Chromosome Location	chr1:225589014-225589015
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225588103..225590846-chr1:225628088..225629720,2	K562	blood:
2	chr1:225586897..225589752-chr1:225607136..225609975,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3442497	chr1:225588829-225592927	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	n/a
2	esv3400632	chr1:225588879-225592877	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225568200-225595800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:225570800-225600000	Weak transcription	HSMMtube	muscle
3	chr1:225576200-225594400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:225578000-225597800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:225578000-225599200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:225580800-225599200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:225581400-225592600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr1:225581600-225596200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:225581800-225590800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:225582000-225597800	Weak transcription	Brain Anterior Caudate	brain
11	chr1:225582200-225591600	Weak transcription	Brain Angular Gyrus	brain
12	chr1:225582200-225591800	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:225582200-225610400	Strong transcription	Fetal Thymus	thymus
14	chr1:225582600-225592400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:225582600-225597800	Weak transcription	Fetal Brain Male	brain
16	chr1:225583200-225594000	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr1:225583200-225597800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:225583400-225589800	Strong transcription	Thymus	Thymus
19	chr1:225583400-225591400	Strong transcription	Stomach Smooth Muscle	stomach
20	chr1:225583400-225595400	Strong transcription	Fetal Brain Female	brain
21	chr1:225583400-225598000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr1:225583400-225601600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr1:225583400-225601600	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr1:225583400-225601800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:225583600-225597800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:225583600-225602200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr1:225583800-225589600	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr1:225583800-225597800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr1:225583800-225601600	Strong transcription	Primary B cells from cord blood	blood
30	chr1:225584000-225603800	Weak transcription	Psoas Muscle	Psoas
31	chr1:225584200-225610600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:225584400-225600600	Weak transcription	Stomach Mucosa	stomach
33	chr1:225584800-225589400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr1:225584800-225595000	Strong transcription	Fetal Intestine Large	intestine
35	chr1:225584800-225609800	Strong transcription	Dnd41	blood
36	chr1:225584800-225610400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr1:225585000-225589200	Strong transcription	Fetal Stomach	stomach
38	chr1:225585000-225589800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr1:225585000-225593000	Strong transcription	NHEK	skin
40	chr1:225585000-225595600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr1:225585000-225595600	Strong transcription	Adipose Nuclei	Adipose
42	chr1:225585000-225609800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr1:225585000-225609800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr1:225585000-225609800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr1:225585000-225610400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr1:225585200-225589800	Strong transcription	Primary T cells from cord blood	blood
47	chr1:225585200-225589800	Strong transcription	Fetal Lung	lung
48	chr1:225585200-225595000	Strong transcription	HMEC	breast
49	chr1:225585200-225596000	Strong transcription	Liver	Liver
50	chr1:225585200-225609800	Strong transcription	Primary T helper cells fromperipheralblood	blood

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