Variant report

Variant	rs552117758
Chromosome Location	chr15:50582962-50582963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50581897..50584737-chr15:50644963..50647895,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000244879	Chromatin interaction
ENSG00000104064	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv819649	chr15:50581839-50584093	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50567600-50593000	Weak transcription	NHDF-Ad	bronchial
2	chr15:50568000-50593400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:50568200-50592000	Weak transcription	NHLF	lung
4	chr15:50568800-50591800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:50568800-50592200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr15:50568800-50599200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:50569200-50591800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:50569200-50592200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:50569800-50585400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:50570000-50591800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr15:50570200-50591800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:50570400-50606600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:50570800-50591800	Weak transcription	HSMMtube	muscle
14	chr15:50570800-50600600	Weak transcription	Spleen	Spleen
15	chr15:50571000-50592000	Weak transcription	Right Ventricle	heart
16	chr15:50571200-50593000	Weak transcription	Fetal Kidney	kidney
17	chr15:50572000-50589600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:50572800-50593200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr15:50573000-50592000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:50573400-50590200	Weak transcription	HMEC	breast
21	chr15:50574400-50602000	Weak transcription	Small Intestine	intestine
22	chr15:50574800-50592000	Weak transcription	Colon Smooth Muscle	Colon
23	chr15:50575000-50588200	Weak transcription	Hela-S3	cervix
24	chr15:50575000-50589800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr15:50575200-50583800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:50575200-50601000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr15:50576000-50583400	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr15:50576000-50583400	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr15:50576000-50583600	Strong transcription	Primary B cells from peripheral blood	blood
30	chr15:50576000-50585200	Strong transcription	Liver	Liver
31	chr15:50576000-50585800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:50576000-50590200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr15:50576000-50592000	Weak transcription	Brain Anterior Caudate	brain
34	chr15:50576200-50583000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:50576200-50583200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr15:50576200-50583600	Strong transcription	Primary hematopoietic stem cells	blood
37	chr15:50576200-50585000	Strong transcription	Fetal Thymus	thymus
38	chr15:50576200-50585600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:50576400-50583400	Strong transcription	Dnd41	blood
40	chr15:50576600-50583400	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr15:50576600-50599000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr15:50577600-50583400	Strong transcription	Adipose Nuclei	Adipose
43	chr15:50578200-50583200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr15:50578200-50592000	Weak transcription	NH-A	brain
45	chr15:50578200-50600400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr15:50578400-50597800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr15:50578600-50591200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr15:50578600-50592000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr15:50578600-50592600	Weak transcription	Brain Angular Gyrus	brain
50	chr15:50579000-50583000	Strong transcription	Placenta	Placenta

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