Variant report

Variant	rs552128
Chromosome Location	chr9:92786144-92786145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10820817	0.89[AFR][1000 genomes]
rs10820826	0.89[YRI][hapmap]
rs10821501	0.85[AFR][1000 genomes]
rs10991697	0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs1443364	0.85[AFR][1000 genomes]
rs17361084	0.84[AFR][1000 genomes]
rs4743823	0.92[YRI][hapmap]
rs4744020	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs496129	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs497510	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs586750	0.96[CHB][hapmap];0.91[JPT][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs652454	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs657899	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661741	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs684476	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7021679	0.85[AFR][1000 genomes]
rs7030563	0.92[YRI][hapmap]
rs920753	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92776800-92787200	Weak transcription	Esophagus	oesophagus
2	chr9:92781400-92790400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:92781600-92786600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:92783000-92789000	Enhancers	Primary B cells from cord blood	blood
5	chr9:92783400-92787000	Enhancers	Primary B cells from peripheral blood	blood
6	chr9:92783400-92787800	Weak transcription	HSMMtube	muscle
7	chr9:92783600-92787200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr9:92784800-92786800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr9:92784800-92788600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr9:92785000-92787200	Weak transcription	Gastric	stomach
11	chr9:92785200-92786400	Enhancers	Adipose Nuclei	Adipose
12	chr9:92785400-92787600	Weak transcription	NHEK	skin
13	chr9:92785600-92786400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr9:92785800-92786400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:92786000-92786200	Enhancers	Lung	lung
16	chr9:92786000-92787800	Enhancers	Duodenum Mucosa	Duodenum
17	chr9:92786000-92787800	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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