Variant report

Variant	rs552130156
Chromosome Location	chr15:92397915-92397916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92395543..92397547-chr15:92397890..92399394,2	K562	blood:
2	chr15:92397715..92399239-chr15:92515184..92517679,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3324058	chr15:92395773-92398821	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3363259	chr15:92395873-92398346	Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92395600-92398000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:92395600-92398000	Active TSS	HSMMtube	muscle
3	chr15:92395600-92398400	Active TSS	Left Ventricle	heart
4	chr15:92395600-92398400	Active TSS	NHLF	lung
5	chr15:92395600-92398600	Active TSS	Aorta	Aorta
6	chr15:92395800-92398000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:92395800-92398000	Active TSS	H9 Cell Line	embryonic stem cell
8	chr15:92395800-92398000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:92395800-92398800	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr15:92396000-92398000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr15:92396000-92398000	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr15:92396000-92398000	Active TSS	Sigmoid Colon	Sigmoid Colon
13	chr15:92396000-92398000	Active TSS	A549	lung
14	chr15:92396000-92398000	Active TSS	HSMM	muscle
15	chr15:92396000-92398200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:92396000-92398200	Active TSS	Esophagus	oesophagus
17	chr15:92396000-92398200	Active TSS	Spleen	Spleen
18	chr15:92396000-92398200	Active TSS	NHDF-Ad	bronchial
19	chr15:92396000-92398400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:92396000-92398400	Active TSS	Breast Myoepithelial Primary Cells	Breast
21	chr15:92396000-92398800	Active TSS	Rectal Smooth Muscle	rectum
22	chr15:92396000-92399200	Active TSS	Brain Cingulate Gyrus	brain
23	chr15:92396000-92399200	Active TSS	Ovary	ovary
24	chr15:92396000-92399200	Active TSS	Right Ventricle	heart
25	chr15:92396000-92399400	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr15:92396000-92399400	Active TSS	Brain Substantia Nigra	brain
27	chr15:92396000-92399400	Active TSS	Right Atrium	heart
28	chr15:92396000-92399800	Active TSS	Brain Angular Gyrus	brain
29	chr15:92396000-92399800	Active TSS	Brain Anterior Caudate	brain
30	chr15:92396200-92398000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:92396200-92398000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
32	chr15:92396200-92398000	Active TSS	HMEC	breast
33	chr15:92396200-92400400	Active TSS	Fetal Brain Female	brain
34	chr15:92396400-92398000	Active TSS	Pancreas	Pancrea
35	chr15:92396400-92398000	Active TSS	NH-A	brain
36	chr15:92396400-92398400	Active TSS	Colonic Mucosa	Colon
37	chr15:92396400-92398400	Active TSS	Lung	lung
38	chr15:92396400-92398600	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
39	chr15:92396400-92399200	Active TSS	Brain Hippocampus Middle	brain
40	chr15:92396600-92398400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
41	chr15:92396800-92398000	Bivalent/Poised TSS	Thymus	Thymus
42	chr15:92396800-92398200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr15:92397200-92398000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
44	chr15:92397200-92398200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
45	chr15:92397200-92398400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:92397200-92398400	Active TSS	Fetal Heart	heart
47	chr15:92397200-92398600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
48	chr15:92397200-92398600	Flanking Active TSS	Primary hematopoietic stem cells	blood
49	chr15:92397200-92398600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr15:92397200-92398800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

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