Variant report

Variant	rs552130461
Chromosome Location	chr10:93668910-93668911
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93639976..93640647-chr10:93668365..93669151,4	MCF-7	breast:
2	chr10:93667092..93669492-chr10:93682952..93684892,2	MCF-7	breast:
3	chr10:93666065..93670682-chr10:93680624..93684315,6	K562	blood:
4	chr10:93668102..93670664-chr10:93683184..93685213,2	K562	blood:
5	chr10:93666676..93671284-chr10:93682037..93685018,8	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BTAF1-1	chr10:93668654-93669105	ENSG00000272817.1

No data

Variant related genes	Relation type
ENSG00000095564	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1798947	chr10:93668341-93674933	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93666200-93669600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr10:93666400-93669400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:93666800-93669400	Active TSS	H9 Cell Line	embryonic stem cell
4	chr10:93667000-93669000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:93667000-93669200	Active TSS	Rectal Smooth Muscle	rectum
6	chr10:93667000-93669400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:93667000-93669600	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr10:93667000-93669600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:93667200-93669200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:93667200-93669400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:93667200-93669400	Active TSS	Colon Smooth Muscle	Colon
12	chr10:93667200-93669600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:93667200-93669600	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr10:93667200-93669600	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr10:93667200-93669600	Active TSS	NHDF-Ad	bronchial
16	chr10:93667200-93669800	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr10:93667400-93669200	Active TSS	NHLF	lung
18	chr10:93667400-93669400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:93667400-93669400	Active TSS	Fetal Intestine Small	intestine
20	chr10:93667400-93669400	Active TSS	Fetal Muscle Trunk	muscle
21	chr10:93667400-93669600	Active TSS	H1 Cell Line	embryonic stem cell
22	chr10:93667400-93669600	Active TSS	Brain Cingulate Gyrus	brain
23	chr10:93667400-93670000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:93667600-93669000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:93667600-93669000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr10:93667600-93669000	Active TSS	Fetal Muscle Leg	muscle
27	chr10:93667600-93669200	Active TSS	Brain Anterior Caudate	brain
28	chr10:93667600-93669200	Active TSS	Psoas Muscle	Psoas
29	chr10:93667600-93669400	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr10:93667600-93669400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:93667600-93669400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
32	chr10:93667600-93669400	Active TSS	Brain Angular Gyrus	brain
33	chr10:93667600-93669400	Active TSS	Brain Substantia Nigra	brain
34	chr10:93667600-93669400	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr10:93667600-93669400	Active TSS	Right Ventricle	heart
36	chr10:93667600-93669600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
37	chr10:93667600-93669600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:93667600-93669600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:93667600-93669600	Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr10:93667600-93669600	Active TSS	Fetal Kidney	kidney
41	chr10:93667600-93669600	Active TSS	Right Atrium	heart
42	chr10:93667600-93669800	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr10:93667600-93669800	Active TSS	K562	blood
44	chr10:93667800-93669000	Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr10:93667800-93669000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr10:93667800-93669000	Active TSS	Spleen	Spleen
47	chr10:93667800-93669200	Active TSS	Gastric	stomach
48	chr10:93667800-93669200	Active TSS	Sigmoid Colon	Sigmoid Colon
49	chr10:93667800-93669400	Active TSS	Aorta	Aorta
50	chr10:93667800-93669400	Active TSS	Brain Inferior Temporal Lobe	brain

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