Variant report

Variant	rs552130700
Chromosome Location	chr18:25828068-25828069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:25828025..25830927-chr20:45947091..45949515,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101040	Chromatin interaction
ENSG00000267882	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9622	chr18:25749905-26032816	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2480689	chr18:25827295-25828818	Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv9090	chr18:25827645-25828425	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2180428	chr18:25827686-25828406	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3316602	chr18:25827761-25828316	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3491214	chr18:25827772-25828318	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3491212	chr18:25827780-25828320	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3491215	chr18:25827806-25828246	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3316600	chr18:25827814-25828282	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3332916	chr18:25827818-25828260	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3316604	chr18:25827826-25828237	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3316599	chr18:25827832-25828279	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3491213	chr18:25827834-25828256	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv3331774	chr18:25827836-25828229	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3316601	chr18:25827860-25828219	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv3316603	chr18:25827863-25828215	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	esv3316605	chr18:25827877-25828226	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	esv3491216	chr18:25827877-25828226	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	esv3491211	chr18:25827878-25828212	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	esv998759	chr18:25827879-25828211	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	esv1543986	chr18:25827892-25828225	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv132148	chr18:25827893-25828225	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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