Variant report

Variant	rs552135442
Chromosome Location	chr11:73631348-73631349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73629846..73633013-chr11:73635127..73638678,4	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv975948	chr11:73630093-73635600	Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73596000-73640800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:73601000-73640400	Weak transcription	Stomach Mucosa	stomach
3	chr11:73602400-73644800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:73606800-73638200	Weak transcription	NHLF	lung
5	chr11:73613000-73640600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:73615400-73640800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:73615800-73633400	Strong transcription	Primary T cells from cord blood	blood
8	chr11:73615800-73633600	Strong transcription	Fetal Muscle Leg	muscle
9	chr11:73615800-73641400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:73616000-73633400	Strong transcription	Fetal Muscle Trunk	muscle
11	chr11:73617600-73646000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:73618000-73646400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:73618400-73641600	Strong transcription	Placenta	Placenta
14	chr11:73618800-73635200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:73618800-73638800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:73619200-73636800	Strong transcription	Fetal Thymus	thymus
17	chr11:73619600-73633200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:73619600-73639800	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr11:73620200-73632000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:73620200-73633000	Strong transcription	Primary B cells from peripheral blood	blood
21	chr11:73620200-73633200	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:73620200-73633400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:73620200-73633400	Strong transcription	GM12878-XiMat	blood
24	chr11:73620200-73633600	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr11:73620200-73634200	Strong transcription	Stomach Smooth Muscle	stomach
26	chr11:73620200-73640800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr11:73620200-73641400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:73620400-73631400	Strong transcription	Primary B cells from cord blood	blood
29	chr11:73620400-73633000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:73620400-73633600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:73620400-73641000	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr11:73622800-73633600	Strong transcription	Lung	lung
33	chr11:73624800-73633000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:73625000-73632800	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr11:73625200-73647200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:73625600-73633800	Strong transcription	Duodenum Mucosa	Duodenum
37	chr11:73625600-73637200	Weak transcription	Right Ventricle	heart
38	chr11:73625600-73646400	Strong transcription	Liver	Liver
39	chr11:73625800-73633400	Strong transcription	Fetal Intestine Large	intestine
40	chr11:73626200-73638200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:73626200-73638400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr11:73626600-73647800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:73627200-73633200	Strong transcription	Thymus	Thymus
44	chr11:73627600-73632000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:73627600-73641400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:73627800-73633600	Strong transcription	Fetal Stomach	stomach
47	chr11:73628000-73646200	Strong transcription	Fetal Intestine Small	intestine
48	chr11:73628200-73632400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:73628200-73632400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:73628400-73631400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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