Variant report

Variant	rs552136997
Chromosome Location	chr6:70460370-70460371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70458655..70460903-chr6:70464788..70467163,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv3350625	chr6:70459031-70461029	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70380800-70467800	Weak transcription	K562	blood
2	chr6:70405000-70468400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:70429000-70462400	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:70429000-70467600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:70431400-70498600	Weak transcription	Ovary	ovary
6	chr6:70432000-70468200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:70432000-70470400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:70432000-70470400	Weak transcription	Gastric	stomach
9	chr6:70432000-70479800	Weak transcription	Pancreas	Pancrea
10	chr6:70432200-70480000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:70432600-70461600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:70435800-70498800	Weak transcription	Adipose Nuclei	Adipose
13	chr6:70441200-70463400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:70442400-70498200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:70442400-70498400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:70443000-70468000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:70444800-70461000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:70446000-70470400	Weak transcription	Psoas Muscle	Psoas
19	chr6:70447800-70498400	Weak transcription	Placenta	Placenta
20	chr6:70448400-70470600	Weak transcription	Right Ventricle	heart
21	chr6:70448800-70489800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:70450600-70472000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr6:70450800-70487600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:70453800-70468600	Weak transcription	Small Intestine	intestine
25	chr6:70453800-70505600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:70455600-70461200	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr6:70455600-70461800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr6:70455600-70462400	Strong transcription	Primary B cells from peripheral blood	blood
29	chr6:70455800-70461600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr6:70455800-70464600	Strong transcription	Primary B cells from cord blood	blood
31	chr6:70456400-70463200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:70456400-70483000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:70456600-70460600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:70456600-70461600	Weak transcription	Brain Substantia Nigra	brain
35	chr6:70456600-70462200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:70456600-70462600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:70456600-70464400	Weak transcription	Fetal Kidney	kidney
38	chr6:70456600-70471600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr6:70456600-70491000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr6:70456800-70463600	Weak transcription	Fetal Intestine Large	intestine
41	chr6:70456800-70468000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr6:70456800-70470600	Weak transcription	Left Ventricle	heart
43	chr6:70456800-70473400	Weak transcription	Aorta	Aorta
44	chr6:70457000-70461400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:70457000-70466000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr6:70457000-70466600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:70457200-70463400	Weak transcription	Fetal Intestine Small	intestine
48	chr6:70457200-70465800	Weak transcription	Fetal Stomach	stomach
49	chr6:70457200-70468200	Weak transcription	Liver	Liver
50	chr6:70457200-70486800	Weak transcription	Thymus	Thymus

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