Variant report

Variant	rs552150324
Chromosome Location	chr11:34204805-34204806
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34202988..34205235-chr11:34209660..34212363,2	K562	blood:
2	chr11:34198458..34205212-chr11:34376041..34381079,14	MCF-7	breast:
3	chr11:34200978..34204921-chr11:34206145..34211160,6	K562	blood:

Variant related genes	Relation type
ENSG00000201867	Chromatin interaction
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv511473	chr11:34202953-34212883	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv10066	chr11:34203744-34204819	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34196200-34207600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:34196400-34206800	Weak transcription	Gastric	stomach
3	chr11:34196400-34207600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:34196600-34205800	Weak transcription	Fetal Brain Female	brain
5	chr11:34196600-34206000	Weak transcription	Pancreas	Pancrea
6	chr11:34196600-34206200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:34196600-34207600	Weak transcription	Left Ventricle	heart
8	chr11:34196600-34210200	Weak transcription	HepG2	liver
9	chr11:34196600-34214000	Weak transcription	Stomach Mucosa	stomach
10	chr11:34196800-34205000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:34196800-34206800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:34197000-34207400	Weak transcription	HSMMtube	muscle
13	chr11:34197400-34205000	Weak transcription	Liver	Liver
14	chr11:34197800-34205200	Enhancers	Brain Hippocampus Middle	brain
15	chr11:34198600-34207000	Weak transcription	NHEK	skin
16	chr11:34198800-34207000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:34199200-34209800	Weak transcription	A549	lung
18	chr11:34199600-34206600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:34199800-34206000	Weak transcription	Brain Germinal Matrix	brain
20	chr11:34202000-34205200	Weak transcription	Fetal Kidney	kidney
21	chr11:34202200-34207200	Weak transcription	HMEC	breast
22	chr11:34202400-34207400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:34202400-34207400	Weak transcription	Fetal Lung	lung
24	chr11:34202400-34214600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:34202800-34206200	Weak transcription	Fetal Thymus	thymus
26	chr11:34203000-34206000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:34203000-34224800	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:34203200-34206000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:34203200-34206200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:34203200-34207200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:34203400-34207600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:34203400-34228200	Weak transcription	Psoas Muscle	Psoas
33	chr11:34203600-34205000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:34203600-34205000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:34203600-34206800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:34203600-34207800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:34203800-34205200	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:34203800-34207000	Weak transcription	Fetal Brain Male	brain
39	chr11:34203800-34207200	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr11:34203800-34207600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:34203800-34207600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:34203800-34207600	Weak transcription	Right Atrium	heart
43	chr11:34204000-34207400	Weak transcription	Brain Anterior Caudate	brain
44	chr11:34204000-34207600	Weak transcription	Adipose Nuclei	Adipose
45	chr11:34204000-34207600	Weak transcription	Brain Substantia Nigra	brain
46	chr11:34204000-34208000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr11:34204200-34207600	Weak transcription	Right Ventricle	heart
48	chr11:34204400-34205400	Strong transcription	HSMM	muscle
49	chr11:34204400-34212000	Weak transcription	GM12878-XiMat	blood
50	chr11:34204600-34207000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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