Variant report

Variant	rs552155
Chromosome Location	chr18:43395175-43395176
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1115699	1.00[AFR][1000 genomes]
rs8090303	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525268	chr18:42748365-43474795	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43387200-43405200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr18:43387400-43397400	Weak transcription	Aorta	Aorta
3	chr18:43387600-43407400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr18:43394200-43395400	Enhancers	Liver	Liver
5	chr18:43394600-43395200	Enhancers	HepG2	liver
6	chr18:43394800-43400000	Weak transcription	NHDF-Ad	bronchial
7	chr18:43394800-43406800	Weak transcription	NHLF	lung
8	chr18:43395000-43398200	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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