Variant report

Variant	rs552162776
Chromosome Location	chr9:116101981-116101982
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116100085..116103833-chr9:116137751..116140667,4	MCF-7	breast:
2	chr9:116065580..116067565-chr9:116101050..116102835,2	MCF-7	breast:
3	chr9:116099899..116105558-chr9:116170913..116174361,7	MCF-7	breast:
4	chr9:116101037..116103011-chr9:116343010..116344663,2	MCF-7	breast:
5	chr9:116101294..116104058-chr9:116110419..116112658,2	K562	blood:
6	chr9:116036149..116038435-chr9:116101107..116104521,3	K562	blood:
7	chr9:116035986..116039204-chr9:116098421..116104240,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119431	Chromatin interaction
ENSG00000165188	Chromatin interaction
ENSG00000138835	Chromatin interaction
ENSG00000176386	Chromatin interaction
ENSG00000157653	Chromatin interaction
ENSG00000136875	Chromatin interaction
ENSG00000119411	Chromatin interaction
ENSG00000148229	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv521449	chr9:116101391-116102463	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116082800-116102000	Weak transcription	Aorta	Aorta
2	chr9:116101200-116102000	Flanking Active TSS	Colon Smooth Muscle	Colon
3	chr9:116101400-116102000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:116101400-116102000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:116101400-116102000	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr9:116101400-116102000	Enhancers	Small Intestine	intestine
7	chr9:116101400-116102000	Flanking Active TSS	Stomach Smooth Muscle	stomach
8	chr9:116101400-116102000	Flanking Active TSS	Hela-S3	cervix
9	chr9:116101400-116102200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr9:116101400-116102200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:116101400-116102200	Flanking Active TSS	Dnd41	blood
12	chr9:116101400-116102800	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr9:116101400-116103000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:116101400-116103200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:116101600-116102000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
16	chr9:116101600-116102000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
17	chr9:116101600-116102000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:116101600-116102000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:116101600-116102000	Enhancers	Primary B cells from peripheral blood	blood
20	chr9:116101600-116102000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr9:116101600-116102000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr9:116101600-116102000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr9:116101600-116102000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr9:116101600-116102000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:116101600-116102000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr9:116101600-116102000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:116101600-116102000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:116101600-116102000	Flanking Active TSS	Adipose Nuclei	Adipose
29	chr9:116101600-116102000	Flanking Active TSS	Brain Anterior Caudate	brain
30	chr9:116101600-116102000	Flanking Active TSS	Brain Cingulate Gyrus	brain
31	chr9:116101600-116102000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
32	chr9:116101600-116102000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr9:116101600-116102000	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr9:116101600-116102000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr9:116101600-116102000	Enhancers	Esophagus	oesophagus
36	chr9:116101600-116102000	Flanking Active TSS	Fetal Brain Male	brain
37	chr9:116101600-116102000	Flanking Active TSS	Fetal Brain Female	brain
38	chr9:116101600-116102000	Flanking Active TSS	Fetal Intestine Small	intestine
39	chr9:116101600-116102000	Flanking Active TSS	Fetal Lung	lung
40	chr9:116101600-116102000	Enhancers	Placenta Amnion	Placenta Amnion
41	chr9:116101600-116102000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
42	chr9:116101600-116102000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
43	chr9:116101600-116102000	Flanking Active TSS	Rectal Smooth Muscle	rectum
44	chr9:116101600-116102000	Flanking Active TSS	HSMM	muscle
45	chr9:116101600-116102000	Flanking Active TSS	K562	blood
46	chr9:116101600-116102000	Flanking Active TSS	NHDF-Ad	bronchial
47	chr9:116101600-116102000	Flanking Active TSS	NHEK	skin
48	chr9:116101600-116102000	Flanking Active TSS	NHLF	lung
49	chr9:116101600-116102000	Flanking Active TSS	Osteobl	bone
50	chr9:116101600-116102200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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