The 2.0 version of rSNPBase

Variant report

Variant rs552165113
Chromosome Location chr4:152583353-152583354
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:152563800-152625200 Weak transcription Hela-S3 cervix
2 chr4:152564200-152595200 Weak transcription Aorta Aorta
3 chr4:152567400-152608600 Weak transcription iPS-20b Cell Line embryonic stem cell
4 chr4:152567800-152609000 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr4:152571200-152584200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr4:152571200-152584200 Weak transcription iPS-15b Cell Line embryonic stem cell
7 chr4:152571600-152583600 Weak transcription Ovary ovary
8 chr4:152571600-152595000 Weak transcription HepG2 liver
9 chr4:152577200-152585000 Strong transcription Breast Myoepithelial Primary Cells Breast
10 chr4:152578400-152595200 Weak transcription ES-I3 Cell Line embryonic stem cell
11 chr4:152579000-152583400 Weak transcription Duodenum Mucosa Duodenum
12 chr4:152579200-152584000 Weak transcription Colonic Mucosa Colon
13 chr4:152579200-152597400 Weak transcription Liver Liver
14 chr4:152579600-152584400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
15 chr4:152579600-152585000 Weak transcription Gastric stomach
16 chr4:152579600-152587600 Weak transcription NHEK skin
17 chr4:152579600-152592200 Weak transcription Right Ventricle heart
18 chr4:152579800-152583400 Weak transcription iPS-18 Cell Line embryonic stem cell
19 chr4:152579800-152584000 Weak transcription HUES64 Cell Line embryonic stem cell
20 chr4:152579800-152585000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr4:152579800-152592800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
22 chr4:152580000-152595200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
23 chr4:152580200-152583800 Weak transcription HMEC breast
24 chr4:152580200-152596000 Weak transcription Placenta Amnion Placenta Amnion
25 chr4:152580800-152583400 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr4:152580800-152595800 Weak transcription HUES6 Cell Line embryonic stem cell
27 chr4:152580800-152596800 Weak transcription Primary T cells from cord blood blood
28 chr4:152581000-152583400 Weak transcription H1 Cell Line embryonic stem cell
29 chr4:152581000-152592000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
30 chr4:152581200-152587600 Weak transcription Dnd41 blood
31 chr4:152581200-152602800 Weak transcription Primary T helper cells fromperipheralblood blood
32 chr4:152581200-152608400 Weak transcription Primary T helper naive cells fromperipheralblood blood
33 chr4:152581400-152583400 Weak transcription H9 Cell Line embryonic stem cell
34 chr4:152581400-152583400 Enhancers Skeletal Muscle Female skeletal muscle
35 chr4:152581400-152584400 Weak transcription Left Ventricle heart
36 chr4:152581400-152585000 Weak transcription Fetal Thymus thymus
37 chr4:152581400-152585000 Weak transcription HSMMtube muscle
38 chr4:152581400-152587600 Weak transcription Fetal Muscle Leg muscle
39 chr4:152581600-152583800 Weak transcription HUES48 Cell Line embryonic stem cell
40 chr4:152581600-152595000 Weak transcription Stomach Smooth Muscle stomach
41 chr4:152581800-152586600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr4:152581800-152595600 Weak transcription Duodenum Smooth Muscle Duodenum
43 chr4:152582000-152583400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr4:152582200-152584400 Weak transcription Fetal Intestine Small intestine
45 chr4:152582400-152588000 Weak transcription Psoas Muscle Psoas
46 chr4:152582400-152588200 Weak transcription Fetal Kidney kidney
47 chr4:152582400-152592600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr4:152582400-152595000 Weak transcription Lung lung
49 chr4:152582400-152595800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
50 chr4:152583000-152583400 Weak transcription Fetal Brain Female brain

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Last update: Aug 31, 2015