Variant report

Variant	rs552169390
Chromosome Location	chr13:53775642-53775643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:53726507..53727505-chr13:53774966..53775870,2	MCF-7	breast:
2	chr13:53239228..53240126-chr13:53775321..53776150,2	MCF-7	breast:
3	chr13:53436613..53437297-chr13:53775140..53775836,2	MCF-7	breast:
4	chr13:53541952..53542484-chr13:53774972..53775830,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3427175	chr13:53773776-53776324	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3386985	chr13:53774176-53776724	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv16748	chr13:53774609-53776399	Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1819513	chr13:53774627-53776265	Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1835841	chr13:53774627-53776265	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv1834091	chr13:53774627-53784083	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv1838050	chr13:53774627-53784083	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv1835986	chr13:53774627-53786026	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv1840677	chr13:53774627-53791895	Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53774200-53776200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:53774200-53776200	ZNF genes & repeats	Spleen	Spleen
3	chr13:53774200-53776600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr13:53774400-53776600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr13:53774400-53776600	Enhancers	Pancreas	Pancrea
6	chr13:53774600-53776000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr13:53774600-53776000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr13:53774800-53775800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr13:53774800-53775800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
10	chr13:53774800-53775800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr13:53774800-53775800	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr13:53774800-53775800	Enhancers	Gastric	stomach
13	chr13:53774800-53776000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr13:53774800-53776400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
15	chr13:53774800-53776400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr13:53774800-53776400	Bivalent Enhancer	Lung	lung
17	chr13:53775000-53776200	Bivalent Enhancer	Adipose Nuclei	Adipose
18	chr13:53775200-53775800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:53775200-53776000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
20	chr13:53775200-53776000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr13:53775200-53776400	Bivalent/Poised TSS	Fetal Brain Female	brain
22	chr13:53775400-53775800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
23	chr13:53775400-53775800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
24	chr13:53775400-53775800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
25	chr13:53775400-53775800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr13:53775400-53775800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr13:53775400-53775800	Bivalent Enhancer	Ovary	ovary
28	chr13:53775400-53776000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr13:53775400-53776000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
30	chr13:53775400-53776400	Active TSS	Brain Anterior Caudate	brain
31	chr13:53775400-53776400	Active TSS	Brain Cingulate Gyrus	brain
32	chr13:53775600-53775800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
33	chr13:53775600-53775800	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr13:53775600-53775800	Bivalent Enhancer	Brain Hippocampus Middle	brain
35	chr13:53775600-53775800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr13:53775600-53776000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr13:53775600-53776000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr13:53775600-53776000	Bivalent Enhancer	Fetal Stomach	stomach
39	chr13:53775600-53776200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr13:53775600-53776200	Bivalent Enhancer	Right Ventricle	heart

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