Variant report

Variant	rs552191036
Chromosome Location	chr1:210572020-210572021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210544698..210555948-chr1:210566953..210584306,65	MCF-7	breast:
2	chr1:210544801..210552702-chr1:210569747..210575327,18	MCF-7	breast:
3	chr1:210546689..210549252-chr1:210570902..210574338,5	K562	blood:
4	chr1:210547526..210548278-chr1:210571817..210572528,2	MCF-7	breast:
5	chr1:210570801..210572444-chr1:210574619..210577549,2	K562	blood:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3345477	chr1:210571912-210572024	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210529600-210586000	Weak transcription	Pancreas	Pancrea
2	chr1:210551400-210586000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:210559000-210584400	Weak transcription	Fetal Stomach	stomach
4	chr1:210566800-210586200	Weak transcription	Lung	lung
5	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
6	chr1:210568200-210572600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr1:210568200-210573800	Weak transcription	Aorta	Aorta
8	chr1:210568800-210573800	Weak transcription	Osteobl	bone
9	chr1:210569200-210573600	Weak transcription	HepG2	liver
10	chr1:210569400-210573600	Weak transcription	Right Ventricle	heart
11	chr1:210570200-210573400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:210570200-210594000	Weak transcription	Fetal Lung	lung
13	chr1:210570400-210574400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:210571200-210573200	Weak transcription	GM12878-XiMat	blood
15	chr1:210571200-210573800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:210571200-210573800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:210571200-210573800	Weak transcription	Right Atrium	heart
18	chr1:210571200-210586200	Weak transcription	Colonic Mucosa	Colon
19	chr1:210571200-210592400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:210571400-210572600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr1:210571400-210573200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:210571400-210573600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr1:210571400-210573800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:210571400-210574200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr1:210571400-210591400	Weak transcription	Ovary	ovary
26	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr1:210571800-210573400	Weak transcription	HSMM	muscle
28	chr1:210571800-210573800	Weak transcription	HSMMtube	muscle

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