Variant report

Variant	rs552227296
Chromosome Location	chr8:38849045-38849046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:38847973..38851292-chr8:38852746..38855360,5	MCF-7	breast:
2	chr8:38842260..38845059-chr8:38847931..38850445,2	MCF-7	breast:
3	chr8:38829292..38831588-chr8:38847607..38850439,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C8orf86-7	chr8:38849013-38849064	NONHSAT126138

Variant related genes	Relation type
ENSG00000253645	Chromatin interaction
ENSG00000168615	Chromatin interaction
ENSG00000169490	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv820251	chr8:38848740-38853026	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38832600-38853000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:38845200-38851600	Strong transcription	Primary B cells from peripheral blood	blood
3	chr8:38845400-38852000	Strong transcription	Osteobl	bone
4	chr8:38845600-38851600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:38845800-38851400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:38845800-38851800	Strong transcription	Fetal Muscle Leg	muscle
7	chr8:38846000-38851200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:38846000-38852400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:38846200-38851400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:38846200-38851400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr8:38846200-38851400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:38846400-38849800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:38846400-38850400	Strong transcription	Dnd41	blood
14	chr8:38846400-38850600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr8:38846400-38851600	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr8:38846400-38852200	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr8:38846400-38852400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:38846400-38852400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:38846400-38852600	Strong transcription	Fetal Muscle Trunk	muscle
20	chr8:38846600-38850600	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr8:38846600-38851400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr8:38846600-38851600	Strong transcription	Fetal Intestine Large	intestine
23	chr8:38846600-38851600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr8:38846600-38852200	Weak transcription	Fetal Heart	heart
25	chr8:38846600-38852400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:38846600-38853000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr8:38846800-38850800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr8:38846800-38851200	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr8:38846800-38851200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr8:38846800-38851200	Strong transcription	Fetal Stomach	stomach
31	chr8:38846800-38851600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr8:38846800-38852200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr8:38847000-38851600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr8:38847400-38852000	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr8:38847400-38852000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr8:38847400-38852200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr8:38847400-38852400	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr8:38847400-38852800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr8:38847600-38849400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr8:38847600-38849600	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr8:38847600-38850000	Strong transcription	HUVEC	blood vessel
42	chr8:38847600-38850200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr8:38847600-38850200	Strong transcription	GM12878-XiMat	blood
44	chr8:38847600-38850800	Strong transcription	NHLF	lung
45	chr8:38847600-38851000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr8:38847600-38851000	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr8:38847600-38851200	Strong transcription	A549	lung
48	chr8:38847600-38851200	Strong transcription	NH-A	brain
49	chr8:38847600-38851400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr8:38847600-38851600	Strong transcription	HUES6 Cell Line	embryonic stem cell

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