Variant report

Variant	rs552229530
Chromosome Location	chr11:23745612-23745613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553757	chr11:23564329-23896729	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1816999	chr11:23723766-23750675	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv897063	chr11:23723766-23940407	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3508599	chr11:23744425-23768884	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3508600	chr11:23744425-23768884	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3457742	chr11:23745260-23745827	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3495149	chr11:23745287-23745825	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3495152	chr11:23745306-23745793	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3495150	chr11:23745309-23745749	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3457775	chr11:23745310-23745805	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3457731	chr11:23745324-23745793	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3457753	chr11:23745331-23745753	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3495148	chr11:23745346-23745763	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3457764	chr11:23745390-23745717	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3495147	chr11:23745400-23745716	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3457786	chr11:23745404-23745714	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3495153	chr11:23745404-23745714	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23742000-23754600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:23745600-23748600	Weak transcription	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links