Variant report

Variant	rs552273531
Chromosome Location	chr8:69067090-69067091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:69066955-69067203	HepG2	liver:	n/a	n/a
2	CEBPB	chr8:69066911-69067138	IMR90	lung:	n/a	n/a
3	CEBPB	chr8:69066895-69067163	K562	blood:	n/a	n/a
4	IRF1	chr8:69067062-69067172	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:91347083..91349227-chr8:69066919..69069417,2	MCF-7	breast:
2	chr8:68988620..68991285-chr8:69064188..69067097,2	K562	blood:

Variant related genes	Relation type
PREX2	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331644	chr8:68806705-69189171	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1792589	chr8:69066748-69085741	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69020000-69082600	Weak transcription	Fetal Stomach	stomach
2	chr8:69021000-69067600	Weak transcription	Right Ventricle	heart
3	chr8:69041000-69068400	Weak transcription	Lung	lung
4	chr8:69043600-69107000	Weak transcription	Brain Substantia Nigra	brain
5	chr8:69046600-69083200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:69046800-69070800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:69047000-69070000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr8:69052600-69104600	Weak transcription	Brain Hippocampus Middle	brain
9	chr8:69055800-69070800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr8:69061800-69074000	Weak transcription	Adipose Nuclei	Adipose
11	chr8:69063800-69068200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:69064800-69067200	Strong transcription	HUVEC	blood vessel
13	chr8:69065200-69067600	Enhancers	K562	blood
14	chr8:69065200-69070000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:69065200-69074000	Weak transcription	Left Ventricle	heart
16	chr8:69065600-69070600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:69066200-69067200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:69066200-69067400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr8:69066200-69067400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr8:69066200-69067400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:69066600-69067600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr8:69066800-69067200	Enhancers	H9 Cell Line	embryonic stem cell
23	chr8:69066800-69067200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr8:69066800-69067400	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr8:69067000-69067400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr8:69067000-69082600	Weak transcription	Brain Anterior Caudate	brain

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