The 2.0 version of rSNPBase

Variant report

Variant rs552280088
Chromosome Location chr12:122800753-122800754
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:122751600-122803400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr12:122752000-122802600 Weak transcription HUES48 Cell Line embryonic stem cell
3 chr12:122752400-122810400 Weak transcription Primary T killer naive cells fromperipheralblood blood
4 chr12:122754600-122822400 Strong transcription Monocytes-CD14+_RO01746 blood
5 chr12:122763600-122812000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr12:122765800-122803400 Weak transcription K562 blood
7 chr12:122770200-122821600 Strong transcription Primary monocytes fromperipheralblood blood
8 chr12:122770400-122821800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr12:122775600-122833600 Strong transcription Liver Liver
10 chr12:122776000-122822200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
11 chr12:122778000-122808800 Weak transcription Fetal Heart heart
12 chr12:122780000-122827200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr12:122780400-122812000 Weak transcription H9 Cell Line embryonic stem cell
14 chr12:122780400-122812600 Weak transcription iPS-18 Cell Line embryonic stem cell
15 chr12:122780800-122800800 Weak transcription Fetal Lung lung
16 chr12:122781400-122821400 Strong transcription Primary neutrophils fromperipheralblood blood
17 chr12:122782800-122803400 Weak transcription Colonic Mucosa Colon
18 chr12:122782800-122803800 Weak transcription ES-I3 Cell Line embryonic stem cell
19 chr12:122785800-122827200 Strong transcription Breast Myoepithelial Primary Cells Breast
20 chr12:122786200-122803200 Strong transcription Stomach Smooth Muscle stomach
21 chr12:122787000-122803800 Strong transcription Duodenum Smooth Muscle Duodenum
22 chr12:122787200-122809000 Strong transcription Primary T cells fromperipheralblood blood
23 chr12:122787400-122803600 Weak transcription Stomach Mucosa stomach
24 chr12:122787800-122804400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr12:122788200-122821200 Strong transcription Primary T regulatory cells fromperipheralblood blood
26 chr12:122790000-122810800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr12:122791200-122841600 Strong transcription Placenta Placenta
28 chr12:122792400-122819800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
29 chr12:122793400-122800800 Weak transcription Brain Cingulate Gyrus brain
30 chr12:122793400-122810600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
31 chr12:122793600-122802200 Weak transcription Fetal Kidney kidney
32 chr12:122794400-122801000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr12:122794600-122802200 Weak transcription Ovary ovary
34 chr12:122794600-122811800 Weak transcription Small Intestine intestine
35 chr12:122794600-122832600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
36 chr12:122795400-122803000 Strong transcription Adipose Nuclei Adipose
37 chr12:122795600-122810600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
38 chr12:122795800-122801000 Weak transcription Primary T helper naive cells from peripheral blood blood
39 chr12:122795800-122818200 Weak transcription Pancreatic Islets Pancreatic Islet
40 chr12:122796000-122802800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr12:122796200-122803400 Strong transcription Fetal Adrenal Gland Adrenal Gland
42 chr12:122796200-122808600 Strong transcription Fetal Muscle Trunk muscle
43 chr12:122796400-122804000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr12:122796600-122804000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr12:122796800-122801200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr12:122796800-122802600 Strong transcription Placenta Amnion Placenta Amnion
47 chr12:122796800-122804200 Strong transcription Primary T helper 17 cells PMA-I stimulated --
48 chr12:122796800-122808600 Strong transcription Fetal Stomach stomach
49 chr12:122797000-122803800 Strong transcription Lung lung
50 chr12:122797000-122808800 Strong transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015